Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe01g1860 ATGGAGGAATATAATCATGTAAACGATAACTCAAATCCGAGAGGAAATAATTTCTTGTACGCATCGGGAATTGTTGGGGGAAATTCGTCATCAGGTAATTTCGGAAGATCAAGCAATAATCCGACGGCTGAGATGGGTGTCAATACGTTTCATCATCTTCAACAAGGAACCGACTGTTTTCAATCCGACGGCCACCAATCATCGCATCCGATTGTGAAGACTGAAGCCACTACTTCTTCTCACCACCACCACCAACTTCTCAAATTTCACTACCCTTTAATCAGACCTGGAGGAGGACCAACTCAGCCACCGCCGCCGCCGCCGACATGTCGCCCCGATCAGAACGCCGTCGTTGATGTTGAAGCCATTAAGGCCAAAATCCTTGCTCATCCTCAATACTCCACCCTCCTCGAAGCCTACATGGAATGTCACAAGGTGGGTGCTCCGCCGCAAGTGGTGGAGCGGCTGGTGGCGGCCCGGCAGGAATTTGAAGCACGGCAGCGATCTTCCATGGCTTCCGGAGAAACCACAAAGGATCCTGAACTTGATCAATTCATGGAAGCTTATTACGACATGTTGGTGAAATATCGGGAGGAACTTACAAGGCCGATTCAAGAAGCCATGGATTTCATGCGAAGAATCGAATCTCAGCTCAGTTCTCTCTGTAACGGCCCAATTCGGATCTTCAATTCCGATGAGAAGTGTGAAGGTATGGGATCGTCCGAGGAGGAACAAGACAATAGCGGCGGAGAAACCGAATTACCGGAGATCGACCCGCGTGCTGAAGACAGAGAATTGAAGAACCACCTACTGAGGAAGTACAGTGGTTACCTGAGCAGCCTCAAGCAAGAACTTTCTAAGAAAAAGAAGAAAGGCAAACTCCCAAAAGATGCAAGGCAGAAACTTCTTAATTGGTGGGAGTTACATTACAAATGGCCATACCCTTCAGAGACAGAGAAGGTGGCATTGGCTGAATCCACTGGATTGGATCAGAAGCAAATAAACAATTGGTTCATAAACCAAAGGAAGAGACACTGGAAACCTTCTGAAGATATGCAGTTCATGGTGATGGATGGCCTTCATCCTCCCAATGCCGCGCTCTATATCGACGGTCACTACATGACCGATGGCCATTATCGGCTCGGCCCGTGA 1152 48.26 MEEYNHVNDNSNPRGNNFLYASGIVGGNSSSGNFGRSSNNPTAEMGVNTFHHLQQGTDCFQSDGHQSSHPIVKTEATTSSHHHHQLLKFHYPLIRPGGGPTQPPPPPPTCRPDQNAVVDVEAIKAKILAHPQYSTLLEAYMECHKVGAPPQVVERLVAARQEFEARQRSSMASGETTKDPELDQFMEAYYDMLVKYREELTRPIQEAMDFMRRIESQLSSLCNGPIRIFNSDEKCEGMGSSEEEQDNSGGETELPEIDPRAEDRELKNHLLRKYSGYLSSLKQELSKKKKKGKLPKDARQKLLNWWELHYKWPYPSETEKVALAESTGLDQKQINNWFINQRKRHWKPSEDMQFMVMDGLHPPNAALYIDGHYMTDGHYRLGP 383
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 83537644 83542617 - Hsped.01g18600.1 Hepe01g1860 560970
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe01g1860 383 Pfam KNOX1 domain 122 164 IPR005540 GO:0003677(InterPro)|GO:0005634(InterPro)
Hepe01g1860 383 SMART HOX_1 287 352 IPR001356 GO:0003677(InterPro)
Hepe01g1860 383 ProSitePatterns 'Homeobox' domain signature. 323 346 IPR017970 GO:0000981(InterPro)|GO:0006355(InterPro)
Hepe01g1860 383 SMART KNOX2_2 172 223 IPR005541 GO:0003677(InterPro)|GO:0005634(InterPro)
Hepe01g1860 383 SUPERFAMILY Homeodomain-like 286 361 IPR009057 -
Hepe01g1860 383 Pfam Homeobox KN domain 305 344 IPR008422 GO:0003677(InterPro)|GO:0006355(InterPro)
Hepe01g1860 383 CDD homeodomain 297 349 IPR001356 GO:0003677(InterPro)
Hepe01g1860 383 SMART ELK_2 265 286 IPR005539 GO:0003677(InterPro)
Hepe01g1860 383 ProSiteProfiles ELK domain profile. 265 285 IPR005539 GO:0003677(InterPro)
Hepe01g1860 383 FunFam Homeobox protein knotted-1-like 2 290 352 - -
Hepe01g1860 383 ProSiteProfiles 'Homeobox' domain profile. 285 348 IPR001356 GO:0003677(InterPro)
Hepe01g1860 383 SMART KNOX1_2 121 165 IPR005540 GO:0003677(InterPro)|GO:0005634(InterPro)
Hepe01g1860 383 Pfam KNOX2 domain 176 222 IPR005541 GO:0003677(InterPro)|GO:0005634(InterPro)
Hepe01g1860 383 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 140 355 IPR050224 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Hepe01g1860 383 Gene3D - 290 352 - -
Hepe01g1860 383 MobiDBLite consensus disorder prediction 232 261 - -
Hepe01g1860 383 Pfam ELK domain 265 286 IPR005539 GO:0003677(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe01g1860 Hepe-Chr1:83537644 Hepe04g1740 Hepe-Chr4:72434067 5.77e-92 dispersed
Hepe01g1860 Hepe-Chr1:83537644 Hepe08g1369 Hepe-Chr8:16039618 3.74e-134 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
54872 PF03791 KNOX2 1.50E-25 No_clan Hepe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe01g1860 - - - 0.0