Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe01g1861 ATGATGATCGGCGAACAATCTAGATTCAATCACACCATTCAAGTCCCCACCTGGGACCCACTCGAAGACCACCACCACCACATCACCGGACTTTCCTCGCCGGTCTTCCTTTCCGCTGGGGTTGACTCCTTTTCCGCCATTCAACGTTACCTTCCCTCCGCCGCGGATTCCGACGAATTGGACGCTGCGGCGTCGCCCGTCGATGGTTTCTCCTGCGACCATTTCCGGATTTTCGAGTTCAAAATTCGGAGATGCGCACGTGGGAGGTCGCACGATTGGACGGAGTGTCCCTACGCCCATCCCGGCGAGAAGGCTCGCCGGCGTGATCCGAGAAAGTATCATTACTCCGGCTCGGCGTGTCCGGAGTTTCGAAAAGGGAATTGCATGAAAGGCGATTCTTGCGATCTCGCTCACGGGATTTTCGAGTGTTGGCTCCATCCAGCTCGCTACCGGACTCAGCCCTGTAAGGATGGACTCGCCTGCCGCCGCCGTGTCTGTTTTTTTGCCCACACGCCGGAGCAGCTCCGGGTTCTGCCGCAGCAGAGTCCAAGAACGCCGGTTTCGGCCGATTCCGGTGATGGGTCATCTCGAATTGCACTCGCATTCGATTCCTATTTTCCCAAGGCGACATTCGTGACCTCCCCCACTTCAATTCTATCAACGCCGCCTCTCTCTCCGCCGTCGGGTTCGCCACCCATGTCGCCGAATTGCCCCCAACTCGGCCGCGGGTCGTTTAATTCGATGAATGGGCTCGTTTCGTCAATGCGTAATTTTCAAATTGGGAAATTGAAAGCAACCCCTCAATGGGGAGTAAATCAAATTAGGCAGAACTTGCTTTCTCCCTCCGGCTCCGGCACTGGTTTGTACAGCTCACCGTCCACTCCGACCACCGTAAATTACGAGTTATGGGGAAAGAATTACGAGGAAGAACCTGCAATGGAGAGAGTAGAATCTGGGAGAAACCTGAGAGCTAAAATGTATGAGAAACTCAGCAAAGACAACTCGGTGGACTCGACATCGACAACTCCGGATGTCGGATGGATCTCGGAGCTATTAATGTGA 1062 54.52 MMIGEQSRFNHTIQVPTWDPLEDHHHHITGLSSPVFLSAGVDSFSAIQRYLPSAADSDELDAAASPVDGFSCDHFRIFEFKIRRCARGRSHDWTECPYAHPGEKARRRDPRKYHYSGSACPEFRKGNCMKGDSCDLAHGIFECWLHPARYRTQPCKDGLACRRRVCFFAHTPEQLRVLPQQSPRTPVSADSGDGSSRIALAFDSYFPKATFVTSPTSILSTPPLSPPSGSPPMSPNCPQLGRGSFNSMNGLVSSMRNFQIGKLKATPQWGVNQIRQNLLSPSGSGTGLYSSPSTPTTVNYELWGKNYEEEPAMERVESGRNLRAKMYEKLSKDNSVDSTSTTPDVGWISELLM 353
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 83561963 83563024 + Hsped.01g18610.1 Hepe01g1861 560971
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe01g1861 353 Gene3D - 115 178 - -
Hepe01g1861 353 SMART c3hfinal6 149 172 IPR000571 GO:0046872(InterPro)
Hepe01g1861 353 SMART c3hfinal6 114 140 IPR000571 GO:0046872(InterPro)
Hepe01g1861 353 FunFam Zinc finger CCCH domain-containing protein 66 72 140 - -
Hepe01g1861 353 ProSiteProfiles Zinc finger C3H1-type profile. 115 141 IPR000571 GO:0046872(InterPro)
Hepe01g1861 353 PANTHER UNKEMPT FAMILY MEMBER 41 352 IPR045234 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe01g1861 Hepe-Chr1:83561963 Hepe08g2641 Hepe-Chr8:68409621 1.07e-112 dispersed
Hepe01g1861 Hepe-Chr1:83561963 Hepe08g1370 Hepe-Chr8:16076543 1.22e-77 wgd
Hepe01g1861 Hepe-Chr1:83561963 Hepe09g0842 Hepe-Chr9:8293413 3.38e-119 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe01g1861 - - - 0.0