Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe01g1868 ATGGAAGCAATCGACGGGGAGAGAGGAGGAGGAGGAAACAAATACTCACTGAAACCATCAAGGATAAACAACGAAGATATTCTCTTCTGCGTAGATGTGAACCCTGAATCTTCGATCGAGATCAAAACCACCGGCTCTAATGGACGACCCATCACCAGAATGGACTCCATTAAGCAAGCAATTCTTCTCTTCGTCCACGCCAAACTCTCCATGAATCCCGACCACCGATTTGCCTTCGTCACCATCGCCAAATCTGCCATTTGGCTCAAAAAAGAGTTTAGCAGTGACATTGCATCTGCAGAGGCTGCAGTCAGGGGGCTTGGTGCTACTTCCTCCTGCAGTCATGCCGATCTTACCAGTCTTTTCCGATTAGCTGCTCACGAAGCAAGAAAGTCGACTGCCCAGAATCGTATTCTAAGAGTGATTCTTATTTACTGCAGATCATCGACACGACCCCAACATCAATGGCCTGCGAGCCAAAAAATCTTCACTTTAGATGTTATATACCTCCACGAGAAGCCTAGTCCCGACAACTGCCCACAGGAGGTGTATGATGTCTTAGTCGATGCCCTTGATCATGTCAGCCAGCATGAAGGCTATATTTTCGAGAGTGGCCAGGGAGTTGCTCGTGTTCTTTACCGTTGCATGTGTCTGTTGTTATCACACCCCCAGCAGCGAATATCGCTAGATGATCTTGACATACCAAAGCCTCTTACAAAGAAATCGCCTCCTGCTGATTCCGTCCCTGCAAGCGAAGTTGTCCCAGTTGCCAGCCAGTGA 780 48.21 MEAIDGERGGGGNKYSLKPSRINNEDILFCVDVNPESSIEIKTTGSNGRPITRMDSIKQAILLFVHAKLSMNPDHRFAFVTIAKSAIWLKKEFSSDIASAEAAVRGLGATSSCSHADLTSLFRLAAHEARKSTAQNRILRVILIYCRSSTRPQHQWPASQKIFTLDVIYLHEKPSPDNCPQEVYDVLVDALDHVSQHEGYIFESGQGVARVLYRCMCLLLSHPQQRISLDDLDIPKPLTKKSPPADSVPASEVVPVASQ 259
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 83606487 83608851 - Hsped.01g18680.1 Hepe01g1868 560978

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Hepe01g1868 259 CDD vWA_BABAM1 25 226 - -
Hepe01g1868 259 SUPERFAMILY vWA-like 27 144 IPR036465 -
Hepe01g1868 259 PANTHER UNCHARACTERIZED 12 257 IPR026126 GO:0045739(InterPro)|GO:0070531(InterPro)|GO:0070552(InterPro)
Hepe01g1868 259 MobiDBLite consensus disorder prediction 235 259 - -
Hepe01g1868 259 Gene3D von Willebrand factor, type A domain 26 164 IPR036465 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe01g1868 K20776 - - csv:101206375 447.203
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g56 Blo01g01474 . . . . Bpe02g00480 . Bma01g02221 . . Cma01g01745 . . . . . . . . . . . . . . . . . . . . . . . . Lsi04g01437 . . . . . . . . . . . Sed13g1850 Cmo01g01765 . . . Car01g01357 . . Cpe02g00252 Bhi09g03172 Tan01g4644 Cmetu07g0123 . Hepe01g1868 Mch11g0403 . . . . . . . . . . . Cme07g00238
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012607 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 29