Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe01g1877 ATGTCGAAAATGAAACATCTTCTTCGAAAGCTTCACATCGGTGGGGGAATTAATGAGCATCAGCGATTGAGCGATGCTCGACCTGTGACGCGACCCAGTTCGAGCCCCAGTCCAGACCCAAGCCCCAATAGTAATCCATCGGGTTCGTCTCCTTCTGGGTCATCTTCGTCTCTGTCTATCGCGCCTTCTACTACAATGGGCAGATTGGAGGCTGTTGAATCCGTCGTTGATCCGGCCGCTCCTGCGGATGTGAGTGGCGGCGGTGATTGCGTCGATTTCAATGCCTTGGAGGAGGAGTATCAGGTGCAATTGGCTATGGCGATTAGCGCTTCCGATCCTGATTACAGACAAGACACTGAATCCGCTCAGATCGATGCTGCTAAGCGGATGAGTCTTGGCTGTTCGCCTTCAATTTCCGGCAGTAAAGCCCTCGCCGAATTTCTCTCGCTTCAGTATTGGAGCTATAATGTCGTTAATTATGAAGAAAAAGTGATGGATGGATTTTATGACTTATACGGCATTACTGCAAACTCTAGCAGCCGTGGAAAGATGCCACTGTTAGTTGATCTTAAAGAAATATGTATTAGGAATGATATTGATTATGAAGTGATTTTGGTAAACCGCTTGCTTGATCCTGAGCTTCAACAGTTGGAGAGACAAGCATATAACATATTCGTGGAATGTGGAGTTTCTGAATATGGCTTCATTTTAAGTGGCTTGGTTCAAAAAATTGCTGATATAGTTGTTGCTAGAATGGGTGGTCCTGTTGGCGATGCCGAAGAAATGTTGAGAAGGTGGACCCTCAGGAGTTATGAGTTGCGTAGTTCTTTGAACACTGTTATTCTACCACTTGGTCGTCTTGATATTGGACTCGCACGTCATAGAGCTTTGCTTTTTAAGGTACTAGCTGACAGGATTAATCTTCCATGCATACTTGTCAAAGGAAGCTACTACACTGGTACTGATGATGGAGCTGTGAATATGATCAAAATTGATAATGGAAGTGAATATATTATTGATCTTATGGGTGCTCCAGGCACGCTCATTCCCTCAGAGGCACCCAGTGGTCAGTTTTCGAATTATGGCTTTGATAGGAGACCCACAGATGTTATAGCAGTTCCTGAAGATACGCCAGTATTACAAAATGAAGGAACTGAAGCAGTATCGATTTCATCTACTCAAGATGGAGTAGCAAATGTTTGCAACTCAATATCCAAAGAAGCTTCAGATGTAGGTGTTCAATCAAAAGAAAACATTCCGAACTTCATTGAAGAAATCCAGACTGGGAGTTCTGATTATGATTTTGGGAAGCTTCTAGAATTAGAAAGCAGTGCATGTGAAAGCTCATTGGGTGCACAGTCGGCGTCTGCACAAAAGAAGAAAGTTAAAAAAGTATCCAAGTATGTCATAAGTGCTGCAAAGAACCCAGAGTTTGCTCAGAAACTACATGCTGTCTTGTTAGAGAGTGGTGCATCACCTCCTGCAGATTTGTTTTCAGATATAGATTCACAGGAGAATGGTGAAAGGAAAGCGACTCACCAAATGTATCCAATCAATGGAAAAGGCATAGATGTTGGGCTTCAGTGCCACCCTTATGTGTTAGCAAGCCACGGACAGTCTTCTGCTACTTCTACTGAAGGAGAGTATTTGAACAATGTTGTCCATGAAAACAAGCAGAAAGTGTCTGCTGAGGGATCATCTGAAGAACAAACACCCGAGACAAATGCAAACATGCACAGCATGTTTTGGCCTCACAGTATGACAAATGAGGGATTTGTGTTTGTTGATGTTAATGGTGAAGCAAGCAAATTGGTTGATGTTAATGGAACTTTTCATCGTGAACATATGGATGGTGTTTTGTTAACCTCTGATGCCGACTCTCATAAAAAACAACTAGGAAGTGCCTTAGTGAGTGAAGAGAGAAGATTGTTGCAAGATAAGAGTGGTGGAACTCTTCAGTGCTTTGATTTCCGTGAAAATCTGTCTGAAAATTTGTTAATTGATAATGGTAACCTGCATGCTAGTGATGGCCACAGTGAGACAATTAACCCAATATTAGGTGAAGTTGCAGAATGGGAAATTCCTTGGGAGGATCTTCACATTGGCGAACGTATTGGTATTGGCTCATATGGCGAGGTTTATCGAGCAGATTGGAATGGCACTGAAGTTGCTGTGAAAAAGTTCTTGGACCAAGATTTATCCGGTGCTGCTTTGGTTCAATTAAAATGTGAAGTTGAAATCATGTTAAGACTGAGGCATCCTAATGTTGTCCTTTTCATGGGAGCGGTCACTCGCCCTCCTCATTTCTCTATCCTTACAGAGTTTCTCCCAAGGGGAAGTTTGTATAGGTTACTGCATCGTCCCAATTCTCAACTTGATGAAAGGAGGCGATTGAAAATGGCTCTTGATGTGGCCAAAGGAATGAACTACTTGCACACAAGTCATCCGACCATTGTTCATAGAGATCTAAAGTCTCCCAATCTCCTTGTTGATAAAAACTGGGTTGTTAAGGTTTGTGATTTTGGTTTGTCACGGGTCAAGCAAAATACATTTCTGTCTTCAAAGTCGACTGCTGGAACGCCTGAATGGATGGCGCCAGAAGTTCTAAGGAATGAACCGGCCGACGAGAAGTGTGATGTGTATAGTTTTGGCGTGATATTGTGGGAGTTGACGACATGCCGCATACCATGGAAAGGTTTGAACCCAATGCAGGTTGTAGGAGCTGTTGGATTCCAGAATAGGCGCCTCGAGATTCCAGAAGATGTTGATCCAGCAGTTGCACAGATCATTTGCGATTGTTGGCAAAGGGATACGCAATTGAGGCCGTCGTTCTCTCAGCTTATTACTCGATTGCGGCGCCTTCAACGGCTTGTCCAGAAAACAAACTCCGGGATTCAAATATTGGAGTGA 2910 43.4 MSKMKHLLRKLHIGGGINEHQRLSDARPVTRPSSSPSPDPSPNSNPSGSSPSGSSSSLSIAPSTTMGRLEAVESVVDPAAPADVSGGGDCVDFNALEEEYQVQLAMAISASDPDYRQDTESAQIDAAKRMSLGCSPSISGSKALAEFLSLQYWSYNVVNYEEKVMDGFYDLYGITANSSSRGKMPLLVDLKEICIRNDIDYEVILVNRLLDPELQQLERQAYNIFVECGVSEYGFILSGLVQKIADIVVARMGGPVGDAEEMLRRWTLRSYELRSSLNTVILPLGRLDIGLARHRALLFKVLADRINLPCILVKGSYYTGTDDGAVNMIKIDNGSEYIIDLMGAPGTLIPSEAPSGQFSNYGFDRRPTDVIAVPEDTPVLQNEGTEAVSISSTQDGVANVCNSISKEASDVGVQSKENIPNFIEEIQTGSSDYDFGKLLELESSACESSLGAQSASAQKKKVKKVSKYVISAAKNPEFAQKLHAVLLESGASPPADLFSDIDSQENGERKATHQMYPINGKGIDVGLQCHPYVLASHGQSSATSTEGEYLNNVVHENKQKVSAEGSSEEQTPETNANMHSMFWPHSMTNEGFVFVDVNGEASKLVDVNGTFHREHMDGVLLTSDADSHKKQLGSALVSEERRLLQDKSGGTLQCFDFRENLSENLLIDNGNLHASDGHSETINPILGEVAEWEIPWEDLHIGERIGIGSYGEVYRADWNGTEVAVKKFLDQDLSGAALVQLKCEVEIMLRLRHPNVVLFMGAVTRPPHFSILTEFLPRGSLYRLLHRPNSQLDERRRLKMALDVAKGMNYLHTSHPTIVHRDLKSPNLLVDKNWVVKVCDFGLSRVKQNTFLSSKSTAGTPEWMAPEVLRNEPADEKCDVYSFGVILWELTTCRIPWKGLNPMQVVGAVGFQNRRLEIPEDVDPAVAQIICDCWQRDTQLRPSFSQLITRLRRLQRLVQKTNSGIQILE 969
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 83658959 83669855 - Hsped.01g18770.1 Hepe01g1877 560987
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe01g1877 969 MobiDBLite consensus disorder prediction 46 64 - -
Hepe01g1877 969 ProSiteProfiles Protein kinase domain profile. 699 958 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Hepe01g1877 969 FunFam Serine/threonine-protein kinase CTR1 778 961 - -
Hepe01g1877 969 CDD STKc_MAP3K-like 705 951 - -
Hepe01g1877 969 Pfam Ethylene-responsive protein kinase Le-CTR1 145 349 - -
Hepe01g1877 969 PRINTS Tyrosine kinase catalytic domain signature 878 900 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Hepe01g1877 969 PRINTS Tyrosine kinase catalytic domain signature 773 786 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Hepe01g1877 969 PRINTS Tyrosine kinase catalytic domain signature 859 869 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Hepe01g1877 969 PRINTS Tyrosine kinase catalytic domain signature 922 944 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Hepe01g1877 969 PRINTS Tyrosine kinase catalytic domain signature 812 830 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Hepe01g1877 969 MobiDBLite consensus disorder prediction 1 64 - -
Hepe01g1877 969 Pfam Protein tyrosine and serine/threonine kinase 699 951 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Hepe01g1877 969 FunFam Serine/threonine-protein kinase isoform 1 690 777 - -
Hepe01g1877 969 Gene3D Phosphorylase Kinase; domain 1 692 776 - -
Hepe01g1877 969 SMART serkin_6 699 958 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Hepe01g1877 969 Gene3D Transferase(Phosphotransferase) domain 1 778 964 - -
Hepe01g1877 969 SUPERFAMILY Protein kinase-like (PK-like) 681 949 IPR011009 -
Hepe01g1877 969 ProSitePatterns Serine/Threonine protein kinases active-site signature. 818 830 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Hepe01g1877 969 PANTHER SERINE-THREONINE PROTEIN KINASE 38 954 IPR050167 GO:0004672(PANTHER)|GO:0005737(PANTHER)|GO:0007165(PANTHER)
Hepe01g1877 969 ProSitePatterns Protein kinases ATP-binding region signature. 705 727 IPR017441 GO:0005524(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe01g1877 Hepe-Chr1:83658959 Hepe09g1569 Hepe-Chr9:42598454 4.72e-216 dispersed
Hepe01g1877 Hepe-Chr1:83658959 Hepe07g2360 Hepe-Chr7:67958237 1.12e-228 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
72483 PF07714 PK_Tyr_Ser-Thr 5.90E-65 CL0016 Hepe PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe01g1877 K04424 - csv:101214554 1661.74