Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe01g1888 ATGATGATGAAAGGTAATTTAATGGTGGATGAGAATTTGTCTGTCTTGACTTGTGCATCTCATGGTGAACTAGCAAGAAATGAAGCCAGTACTGACCCTCTTTATTCTCATCACTCCTCTGCTTCCACAAATCAACTGCCACCGCCACCGCCACCGTCGAAGAAGAAGCGGAATCTTCCCGGCAACCCAGACCCAGATGCCGAAGTGATAGCTATGTCTCCGAAAGCGCTTATGGCGACGAATAGATTCATGTGTGAGATCTGTAACAAGGGGTTTCAAAGAGATCAGAATCTTCAACTTCACAGAAGAGGGCACAATCTTCCATGGAAGCTAAAGCAAAGAGGCAACAAGGAAGTGAGGAAGAAGGTGTACGTGTGCCCGGAACCGACGTGCGTGCACCATCACCCGTCGAGGGCTCTCGGCGATCTAACTGGGATCAAGAAGCACTTCAGCAGGAAGCACGGCGAGAAGAAGTGGAAGTGTGAAAAGTGTTCAAAGAGATATGCAGTTCAATCAGATTGGAAAGCTCACTCCAAGATTTGTGGCACTAGAGAGTATAAATGTGACTGTGGAACCCTCTTCTCTAGGAGGGACAGTTTCATAACCCACAGAGCATTCTGCAATGCTTTGGCTCAGGAAGAAAGTACCAATTTTACATCATCATCATCACCCTTAAATAACAACAACCCAATTTTCTCTTCTCTTCTTCACCCTAATAATTTCCCACTTAAAATTGAAAACCAAGACCATTTTTTCCCTTTAATTTCCCATCAACAAATTCAACAACACCATAATATCCTCATTCCCACCTTTCACAACCCTAACCCTAACCCTAATCCTACTTCAATTGGATTCGGGTTACCGGGTCCGGGTTCGGGTTCGGGTCCCGTGTTTGGTTCTTCATGTACTCCTGCATGGGAATTGAATTCTCCAGCTGAAACTCCTCCTCTTCCATTGTTTCATCACATGATGCCTTTTGAAGAGGCCTCCTTTGAAGAAGCTTTAATTAATGGGATATTGATGAATAATAGAGCTAATAAAGACGGCGACAAAGACGGCGGTGGCGGCGGCGCTGGAGAGATAACGAGGGATTTTCTTGGCCTAAGAGCGGTGGCTCGACAGCCGCCGGATCGTCGTATGTTCGAGAATGTGATAATAAACGATATGTCGAATTTGGATTCTTCTCCTTCTTCCACATTTGGATTGCACCAGAATCATCAAATTCAGCAGACCACATTTTGGCGTGATTAA 1251 45.16 MMMKGNLMVDENLSVLTCASHGELARNEASTDPLYSHHSSASTNQLPPPPPPSKKKRNLPGNPDPDAEVIAMSPKALMATNRFMCEICNKGFQRDQNLQLHRRGHNLPWKLKQRGNKEVRKKVYVCPEPTCVHHHPSRALGDLTGIKKHFSRKHGEKKWKCEKCSKRYAVQSDWKAHSKICGTREYKCDCGTLFSRRDSFITHRAFCNALAQEESTNFTSSSSPLNNNNPIFSSLLHPNNFPLKIENQDHFFPLISHQQIQQHHNILIPTFHNPNPNPNPTSIGFGLPGPGSGSGPVFGSSCTPAWELNSPAETPPLPLFHHMMPFEEASFEEALINGILMNNRANKDGDKDGGGGGAGEITRDFLGLRAVARQPPDRRMFENVIINDMSNLDSSPSSTFGLHQNHQIQQTTFWRD 416
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 83724621 83727535 - Hsped.01g18880.1 Hepe01g1888 560998
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe01g1888 416 SUPERFAMILY beta-beta-alpha zinc fingers 82 179 IPR036236 -
Hepe01g1888 416 Gene3D Classic Zinc Finger 137 217 - -
Hepe01g1888 416 Pfam BIRD-IDD transcription factor, second C2H2 zinc finger 120 154 - -
Hepe01g1888 416 MobiDBLite consensus disorder prediction 27 68 - -
Hepe01g1888 416 ProSiteProfiles Zinc finger C2H2 type domain profile. 83 105 IPR013087 -
Hepe01g1888 416 Pfam Zinc finger, C2H2 type 83 105 IPR013087 -
Hepe01g1888 416 Gene3D Classic Zinc Finger 65 130 - -
Hepe01g1888 416 FunFam protein indeterminate-domain 12-like 62 130 - -
Hepe01g1888 416 Pfam BIRD-IDD transcription factor, fourth C2HC zinc finger 185 223 - -
Hepe01g1888 416 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 39 251 IPR031140 GO:0003700(PANTHER)|GO:0005634(PANTHER)
Hepe01g1888 416 MobiDBLite consensus disorder prediction 395 416 - -
Hepe01g1888 416 FunFam protein indeterminate-domain 5, chloroplastic-like 137 216 - -
Hepe01g1888 416 Pfam BIRD-IDD transcription factor, third C2HC zinc finger 158 182 - -
Hepe01g1888 416 ProSitePatterns Zinc finger C2H2 type domain signature. 85 105 IPR013087 -
Hepe01g1888 416 SMART c2h2final6 124 154 IPR013087 -
Hepe01g1888 416 SMART c2h2final6 159 179 IPR013087 -
Hepe01g1888 416 SMART c2h2final6 83 105 IPR013087 -
Hepe01g1888 416 MobiDBLite consensus disorder prediction 44 58 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe01g1888 Hepe-Chr1:83724621 Hepe02g1503 Hepe-Chr2:19588767 1.45e-105 dispersed
Hepe07g2566 Hepe-Chr7:70116971 Hepe01g1888 Hepe-Chr1:83724621 5.90e-71 transposed
Hepe01g1888 Hepe-Chr1:83724621 Hepe03g1458 Hepe-Chr3:71360079 9.00e-102 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
54874 PF12171 zf-C2H2_jaz 5.00E-05 CL0361 Hepe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe01g1888 K25870 - csv:101215280 502.671