Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Hepe01g1888 | ATGATGATGAAAGGTAATTTAATGGTGGATGAGAATTTGTCTGTCTTGACTTGTGCATCTCATGGTGAACTAGCAAGAAATGAAGCCAGTACTGACCCTCTTTATTCTCATCACTCCTCTGCTTCCACAAATCAACTGCCACCGCCACCGCCACCGTCGAAGAAGAAGCGGAATCTTCCCGGCAACCCAGACCCAGATGCCGAAGTGATAGCTATGTCTCCGAAAGCGCTTATGGCGACGAATAGATTCATGTGTGAGATCTGTAACAAGGGGTTTCAAAGAGATCAGAATCTTCAACTTCACAGAAGAGGGCACAATCTTCCATGGAAGCTAAAGCAAAGAGGCAACAAGGAAGTGAGGAAGAAGGTGTACGTGTGCCCGGAACCGACGTGCGTGCACCATCACCCGTCGAGGGCTCTCGGCGATCTAACTGGGATCAAGAAGCACTTCAGCAGGAAGCACGGCGAGAAGAAGTGGAAGTGTGAAAAGTGTTCAAAGAGATATGCAGTTCAATCAGATTGGAAAGCTCACTCCAAGATTTGTGGCACTAGAGAGTATAAATGTGACTGTGGAACCCTCTTCTCTAGGAGGGACAGTTTCATAACCCACAGAGCATTCTGCAATGCTTTGGCTCAGGAAGAAAGTACCAATTTTACATCATCATCATCACCCTTAAATAACAACAACCCAATTTTCTCTTCTCTTCTTCACCCTAATAATTTCCCACTTAAAATTGAAAACCAAGACCATTTTTTCCCTTTAATTTCCCATCAACAAATTCAACAACACCATAATATCCTCATTCCCACCTTTCACAACCCTAACCCTAACCCTAATCCTACTTCAATTGGATTCGGGTTACCGGGTCCGGGTTCGGGTTCGGGTCCCGTGTTTGGTTCTTCATGTACTCCTGCATGGGAATTGAATTCTCCAGCTGAAACTCCTCCTCTTCCATTGTTTCATCACATGATGCCTTTTGAAGAGGCCTCCTTTGAAGAAGCTTTAATTAATGGGATATTGATGAATAATAGAGCTAATAAAGACGGCGACAAAGACGGCGGTGGCGGCGGCGCTGGAGAGATAACGAGGGATTTTCTTGGCCTAAGAGCGGTGGCTCGACAGCCGCCGGATCGTCGTATGTTCGAGAATGTGATAATAAACGATATGTCGAATTTGGATTCTTCTCCTTCTTCCACATTTGGATTGCACCAGAATCATCAAATTCAGCAGACCACATTTTGGCGTGATTAA | 1251 | 45.16 | MMMKGNLMVDENLSVLTCASHGELARNEASTDPLYSHHSSASTNQLPPPPPPSKKKRNLPGNPDPDAEVIAMSPKALMATNRFMCEICNKGFQRDQNLQLHRRGHNLPWKLKQRGNKEVRKKVYVCPEPTCVHHHPSRALGDLTGIKKHFSRKHGEKKWKCEKCSKRYAVQSDWKAHSKICGTREYKCDCGTLFSRRDSFITHRAFCNALAQEESTNFTSSSSPLNNNNPIFSSLLHPNNFPLKIENQDHFFPLISHQQIQQHHNILIPTFHNPNPNPNPTSIGFGLPGPGSGSGPVFGSSCTPAWELNSPAETPPLPLFHHMMPFEEASFEEALINGILMNNRANKDGDKDGGGGGAGEITRDFLGLRAVARQPPDRRMFENVIINDMSNLDSSPSSTFGLHQNHQIQQTTFWRD | 416 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 83724621 | 83727535 | - | Hsped.01g18880.1 | Hepe01g1888 | 560998 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Hepe01g1888 | 416 | SUPERFAMILY | beta-beta-alpha zinc fingers | 82 | 179 | IPR036236 | - | |
Hepe01g1888 | 416 | Gene3D | Classic Zinc Finger | 137 | 217 | - | - | |
Hepe01g1888 | 416 | Pfam | BIRD-IDD transcription factor, second C2H2 zinc finger | 120 | 154 | - | - | |
Hepe01g1888 | 416 | MobiDBLite | consensus disorder prediction | 27 | 68 | - | - | |
Hepe01g1888 | 416 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 83 | 105 | IPR013087 | - | |
Hepe01g1888 | 416 | Pfam | Zinc finger, C2H2 type | 83 | 105 | IPR013087 | - | |
Hepe01g1888 | 416 | Gene3D | Classic Zinc Finger | 65 | 130 | - | - | |
Hepe01g1888 | 416 | FunFam | protein indeterminate-domain 12-like | 62 | 130 | - | - | |
Hepe01g1888 | 416 | Pfam | BIRD-IDD transcription factor, fourth C2HC zinc finger | 185 | 223 | - | - | |
Hepe01g1888 | 416 | PANTHER | SERINE/THREONINE-PROTEIN KINASE RIO | 39 | 251 | IPR031140 | GO:0003700(PANTHER)|GO:0005634(PANTHER) | |
Hepe01g1888 | 416 | MobiDBLite | consensus disorder prediction | 395 | 416 | - | - | |
Hepe01g1888 | 416 | FunFam | protein indeterminate-domain 5, chloroplastic-like | 137 | 216 | - | - | |
Hepe01g1888 | 416 | Pfam | BIRD-IDD transcription factor, third C2HC zinc finger | 158 | 182 | - | - | |
Hepe01g1888 | 416 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 85 | 105 | IPR013087 | - | |
Hepe01g1888 | 416 | SMART | c2h2final6 | 124 | 154 | IPR013087 | - | |
Hepe01g1888 | 416 | SMART | c2h2final6 | 159 | 179 | IPR013087 | - | |
Hepe01g1888 | 416 | SMART | c2h2final6 | 83 | 105 | IPR013087 | - | |
Hepe01g1888 | 416 | MobiDBLite | consensus disorder prediction | 44 | 58 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Hepe01g1888 | Hepe-Chr1:83724621 | Hepe02g1503 | Hepe-Chr2:19588767 | 1.45e-105 | dispersed | |
Hepe07g2566 | Hepe-Chr7:70116971 | Hepe01g1888 | Hepe-Chr1:83724621 | 5.90e-71 | transposed | |
Hepe01g1888 | Hepe-Chr1:83724621 | Hepe03g1458 | Hepe-Chr3:71360079 | 9.00e-102 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
54874 | PF12171 | zf-C2H2_jaz | 5.00E-05 | CL0361 | Hepe | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Hepe01g1888 | K25870 | - | csv:101215280 | 502.671 |