Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe01g1892 ATGGGGGGTTCTGGGAAATGGATGAAGGTTTTTATAGGACACAGGAAGTCTGAGAAGGAAGACAATGAGAAGTTGGGTAGTAAAACTAAGAAATGGAGGCTATGGAGGAGCCCATCAGGGGATTTGAGCAATGCTTGGAAGGGTTATAAAGGGGGTCATAAAGCAGCTTCTGAAGGCTCTGATTCGCCTCGAGCGGTTGATTCTTTTAGTGCCGCCGTCGCCACCGTCCTCCGTGCAGCACCCAAAAATTTCAGGGTTGTCCGCCAAGAATGGGCCGCAATTCGAATCCAAACAGCATTTCGCGGTTTCTTGTCTAGGAGGGCTCTTAGGGCCTTGAAGGGAGTGGTGAGGCTTCAAGCTCTGGTGAGGGGTCGTTTGGTGAGGAAGCAGGCAGCTGTTACACTGAGGTGCATGCAGGCTCTGGTTCGAGTCCAAGCTCGAGTCAGGGCGCGTCGTGTGAGGATGTCGATCGAGGGGCAGGCCGTGCAGCAATTGCTTAATGTACATCGCAGCAAGGCTGATCTCTTGAAGCAAGCTGAGGAAGGTTGGTGTGATAGCAAAGGGACATTGAATGATATCAAAACTAAGTTACAAATGAGGCAAGATGGAGCATTTAAGAGGGAGAGAGCAATTGCATACTCTCTTGTTCAAAAGCAATTGAAGGCAACACCAAGCTCAACGTTGCGAACAAATGCTTCAATTTATGCTCTTAAGAATTGCGAGTTCGACAAGAACAATTGGGGATGGAGTTGGTTGGAGAGATGGATGGCAGCGAAGCCGTGGGAGACAAGGTTGATGGAACAATCTCGCACCGATTCCTTGGAGGCCACTCCGCCTTCAAAGAGCTGTACTACAGAGTCTGTTGTGTCTAAACATTCGCATTCCAAAGGTTCTGAACCAAGTTTGGTGAAAGTTAGGAAGAACAATGTATCAACTAGGATTTCTGCTAAACCTCCCTCATGTGGGCAAGCTCGTTCTTGTTCTAGCCCAAGTTCTGATTTCTGGTATGACGAGAGCTCTGCTTCATCTTCAATCTGCACGTCGACAACTCCTATTTCGGGGCATGCTTTCTCAACCATAGAAAGAACAGAGAATAGCAGTTACAGTAGACCCAGTTACATGAACCTTACTGAGTCGACAAAGGCGAAGCAGAAAACATATAGCCACTTATCGCACCGAGCTCAAAGACAGTCCATGGATGAGTATCAATTCCTTCAAAAGTCGGCAGCTTTCTCAAATGGGGATTCTAAGAGCAGTGCTGGTTCTGATTCATCAGTCAACCCCTTCAAGCCATTGATGATGCCAACACGATTTGATAAAGAATGGAACAAAGCTAAGGTCATGAGCAATTAG 1353 47.38 MGGSGKWMKVFIGHRKSEKEDNEKLGSKTKKWRLWRSPSGDLSNAWKGYKGGHKAASEGSDSPRAVDSFSAAVATVLRAAPKNFRVVRQEWAAIRIQTAFRGFLSRRALRALKGVVRLQALVRGRLVRKQAAVTLRCMQALVRVQARVRARRVRMSIEGQAVQQLLNVHRSKADLLKQAEEGWCDSKGTLNDIKTKLQMRQDGAFKRERAIAYSLVQKQLKATPSSTLRTNASIYALKNCEFDKNNWGWSWLERWMAAKPWETRLMEQSRTDSLEATPPSKSCTTESVVSKHSHSKGSEPSLVKVRKNNVSTRISAKPPSCGQARSCSSPSSDFWYDESSASSSICTSTTPISGHAFSTIERTENSSYSRPSYMNLTESTKAKQKTYSHLSHRAQRQSMDEYQFLQKSAAFSNGDSKSSAGSDSSVNPFKPLMMPTRFDKEWNKAKVMSN 450
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 83760206 83762504 - Hsped.01g18920.1 Hepe01g1892 561002

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Hepe01g1892 450 PANTHER IQ-DOMAIN 5-RELATED 7 400 - -
Hepe01g1892 450 SMART iq_5 111 132 IPR000048 GO:0005515(InterPro)
Hepe01g1892 450 SMART iq_5 88 110 IPR000048 GO:0005515(InterPro)
Hepe01g1892 450 ProSiteProfiles IQ motif profile. 113 140 - -
Hepe01g1892 450 ProSiteProfiles IQ motif profile. 89 117 - -
Hepe01g1892 450 MobiDBLite consensus disorder prediction 270 304 - -
Hepe01g1892 450 MobiDBLite consensus disorder prediction 412 433 - -
Hepe01g1892 450 FunFam IQ-domain 11 88 139 - -
Hepe01g1892 450 MobiDBLite consensus disorder prediction 412 426 - -
Hepe01g1892 450 MobiDBLite consensus disorder prediction 269 304 - -
Hepe01g1892 450 Pfam IQ calmodulin-binding motif 113 130 IPR000048 GO:0005515(InterPro)
Hepe01g1892 450 Pfam IQ calmodulin-binding motif 91 110 IPR000048 GO:0005515(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe01g1892 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe01g1892 Hepe-Chr1:83760206 Hepe09g1233 Hepe-Chr9:15956958 3.26e-45 dispersed
Hepe01g1892 Hepe-Chr1:83760206 Hepe03g1455 Hepe-Chr3:71311569 1.13e-56 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Hepe02g2982 . 1 480 IQD Protein Family AT3G52290 53.7 2.4e-103 372.9
Hepe09g1233 . 1 396 IQD Protein Family AT3G22190 58.0 3.7e-96 349.0
Hepe01g1892 . 1 440 IQD Protein Family AT2G26180 60.2 1.4e-119 426.8
Hepe04g1898 . 1 279 IQD Protein Family AT2G33990 52.6 1.4e-64 243.4
Hepe07g0994 . 40 215 IQD Protein Family AT2G33990 54.7 8.0e-49 191.0
Hepe07g0994 . 21 230 IQD Protein Family AT3G15050 56.1 1.0e-56 217.2
Hepe02g2513 . 120 472 IQD Protein Family AT5G13460 50.8 5.4e-74 275.4
Hepe03g1505 . 1 398 IQD Protein Family AT3G16490 51.5 4.2e-70 262.3
Hepe09g0820 . 1 396 IQD Protein Family AT3G16490 51.8 1.6e-69 260.4
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005507 1 1 2 1 2 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 2 1 1 1 1 1 3 1 1 39