Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe01g1892 ATGGGGGGTTCTGGGAAATGGATGAAGGTTTTTATAGGACACAGGAAGTCTGAGAAGGAAGACAATGAGAAGTTGGGTAGTAAAACTAAGAAATGGAGGCTATGGAGGAGCCCATCAGGGGATTTGAGCAATGCTTGGAAGGGTTATAAAGGGGGTCATAAAGCAGCTTCTGAAGGCTCTGATTCGCCTCGAGCGGTTGATTCTTTTAGTGCCGCCGTCGCCACCGTCCTCCGTGCAGCACCCAAAAATTTCAGGGTTGTCCGCCAAGAATGGGCCGCAATTCGAATCCAAACAGCATTTCGCGGTTTCTTGTCTAGGAGGGCTCTTAGGGCCTTGAAGGGAGTGGTGAGGCTTCAAGCTCTGGTGAGGGGTCGTTTGGTGAGGAAGCAGGCAGCTGTTACACTGAGGTGCATGCAGGCTCTGGTTCGAGTCCAAGCTCGAGTCAGGGCGCGTCGTGTGAGGATGTCGATCGAGGGGCAGGCCGTGCAGCAATTGCTTAATGTACATCGCAGCAAGGCTGATCTCTTGAAGCAAGCTGAGGAAGGTTGGTGTGATAGCAAAGGGACATTGAATGATATCAAAACTAAGTTACAAATGAGGCAAGATGGAGCATTTAAGAGGGAGAGAGCAATTGCATACTCTCTTGTTCAAAAGCAATTGAAGGCAACACCAAGCTCAACGTTGCGAACAAATGCTTCAATTTATGCTCTTAAGAATTGCGAGTTCGACAAGAACAATTGGGGATGGAGTTGGTTGGAGAGATGGATGGCAGCGAAGCCGTGGGAGACAAGGTTGATGGAACAATCTCGCACCGATTCCTTGGAGGCCACTCCGCCTTCAAAGAGCTGTACTACAGAGTCTGTTGTGTCTAAACATTCGCATTCCAAAGGTTCTGAACCAAGTTTGGTGAAAGTTAGGAAGAACAATGTATCAACTAGGATTTCTGCTAAACCTCCCTCATGTGGGCAAGCTCGTTCTTGTTCTAGCCCAAGTTCTGATTTCTGGTATGACGAGAGCTCTGCTTCATCTTCAATCTGCACGTCGACAACTCCTATTTCGGGGCATGCTTTCTCAACCATAGAAAGAACAGAGAATAGCAGTTACAGTAGACCCAGTTACATGAACCTTACTGAGTCGACAAAGGCGAAGCAGAAAACATATAGCCACTTATCGCACCGAGCTCAAAGACAGTCCATGGATGAGTATCAATTCCTTCAAAAGTCGGCAGCTTTCTCAAATGGGGATTCTAAGAGCAGTGCTGGTTCTGATTCATCAGTCAACCCCTTCAAGCCATTGATGATGCCAACACGATTTGATAAAGAATGGAACAAAGCTAAGGTCATGAGCAATTAG 1353 47.38 MGGSGKWMKVFIGHRKSEKEDNEKLGSKTKKWRLWRSPSGDLSNAWKGYKGGHKAASEGSDSPRAVDSFSAAVATVLRAAPKNFRVVRQEWAAIRIQTAFRGFLSRRALRALKGVVRLQALVRGRLVRKQAAVTLRCMQALVRVQARVRARRVRMSIEGQAVQQLLNVHRSKADLLKQAEEGWCDSKGTLNDIKTKLQMRQDGAFKRERAIAYSLVQKQLKATPSSTLRTNASIYALKNCEFDKNNWGWSWLERWMAAKPWETRLMEQSRTDSLEATPPSKSCTTESVVSKHSHSKGSEPSLVKVRKNNVSTRISAKPPSCGQARSCSSPSSDFWYDESSASSSICTSTTPISGHAFSTIERTENSSYSRPSYMNLTESTKAKQKTYSHLSHRAQRQSMDEYQFLQKSAAFSNGDSKSSAGSDSSVNPFKPLMMPTRFDKEWNKAKVMSN 450
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 83760206 83762504 - Hsped.01g18920.1 Hepe01g1892 561002
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe01g1892 450 PANTHER IQ-DOMAIN 5-RELATED 7 400 - -
Hepe01g1892 450 SMART iq_5 111 132 IPR000048 GO:0005515(InterPro)
Hepe01g1892 450 SMART iq_5 88 110 IPR000048 GO:0005515(InterPro)
Hepe01g1892 450 ProSiteProfiles IQ motif profile. 113 140 - -
Hepe01g1892 450 ProSiteProfiles IQ motif profile. 89 117 - -
Hepe01g1892 450 MobiDBLite consensus disorder prediction 270 304 - -
Hepe01g1892 450 MobiDBLite consensus disorder prediction 412 433 - -
Hepe01g1892 450 FunFam IQ-domain 11 88 139 - -
Hepe01g1892 450 MobiDBLite consensus disorder prediction 412 426 - -
Hepe01g1892 450 MobiDBLite consensus disorder prediction 269 304 - -
Hepe01g1892 450 Pfam IQ calmodulin-binding motif 113 130 IPR000048 GO:0005515(InterPro)
Hepe01g1892 450 Pfam IQ calmodulin-binding motif 91 110 IPR000048 GO:0005515(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe01g1892 Hepe-Chr1:83760206 Hepe09g1233 Hepe-Chr9:15956958 3.26e-45 dispersed
Hepe01g1892 Hepe-Chr1:83760206 Hepe03g1455 Hepe-Chr3:71311569 1.13e-56 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe01g1892 - - - 0.0