Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe01g1901 ATGGAGGATCGGGAGGAGGAACGGAAGGTAGAAGAGGTGCAAGGTTCCAGTCTGACGATGGAGAAAGTGGCGGCGGCTAAGAAGTTTATAGAGAACCATTACAGAGCTCAGATGAAGAACATTCAAGAGCGGAAGGAGAGACGATGGATGTTGGAAAGAAAGTTAGCCTCATCAGACGTGCCTAAGGAAGAACAAATCAATCTTATCAAAGATTTAGAGCGGAAAGAAACTGAGTTTATGCGACTTAAAAGGCACAAGATTTGTGTTGATGATTTTGAGCTTTTAACCATCATTGGCAGGGGGGCTTTTGGTGAGGTTCGGTTATGTCGTGAGAAGAAATCTGGCGATATATATGCCATGAAAAAGTTGAAAAAATCTGAAATGGTGATGAGAGGACAGGTGGAACATGTTAGAGCAGAAAGGAATTTATTAGCAGAAGTTGCCAGCCATTGCATAGTGAAGCTTTATTACTCATTCCAGGATGCTGAGTACTTGTATTTGATCATGGAATATCTGCCAGGTGGAGATATGATGACTCTGCTTATGAGAGAAGACACATTGACTGAAAATGTGGCTAAATTTTACATTGCACAAAGTGTTCTTGCAATAGAATCTATCCACAGGCACAACTATATTCACAGGGATATTAAACCTGACAATCTTCTTCTGGACAAAAATGGTCACATGAAGCTTTCTGATTTTGGTCTCTGTAAGCCACTGGATTCTATAACCCTATCAGCACTACATGAAAATAAAGTCATGGATGATGGAAATTTGGCAGAACCAATGGACATTGATAATAATAGGAGTAGTTGGAAGAGTCCCAGCGAACAACTACACCATTGGCAAATGAATCGGAGGAAATTGGCATTTTCAACAGTTGGAACACCCGATTATATAGCTCCGGAAGTATTACTTAAAAAAGGATATGGGATGGAGTGCGACTGGTGGTCCCTCGGAGCAATTATGTATGAGATGCTCGTAGGCTACCCTCCATTTTACTCCGATGATCCAATCGCCACCTGCAGAAAGATTGTTCATTGGAAAAATCAATTGAAGTTTCCAGAAGATGCTAGGTTGACAATTGAAGCAAAGGATCTCATTTGTAGGTTGCTTTGCGACGTTGAGCATAGACTTGGTACTGGAGGAGCATACCAAATTAAAGCTCATCCTTGGTTCAAAGATGTCGTCTGGGATAGGCTTTATGAAATGGAGGCAGCATTTAAGCCTGAAGTCAATGGAGAGCTCGATACCCAGAACTTTATGAAGTTTGATGAATTGGATCCACCTATACCAGGAAAACGTGGCTCAGGACCGTCAAGGAAGATGCTATTGACTCCCAAAGATCTCAGCTTTGTTGGGTATACATACAAGAACTTCGATGCTGTCAAAGGGCTTCAAGGATCACTTGATTCTCATAGATTGTCATTGAAACAGCCTCCAATTGACGTATTAAATGGCACCGGGGGAGACTACACAACCGAACTAATTGCCAATGAGGCCGAAATGCAGATGCTAGCAGTATCAGGAGACCCCATGATGCCATAA 1548 42.05 MEDREEERKVEEVQGSSLTMEKVAAAKKFIENHYRAQMKNIQERKERRWMLERKLASSDVPKEEQINLIKDLERKETEFMRLKRHKICVDDFELLTIIGRGAFGEVRLCREKKSGDIYAMKKLKKSEMVMRGQVEHVRAERNLLAEVASHCIVKLYYSFQDAEYLYLIMEYLPGGDMMTLLMREDTLTENVAKFYIAQSVLAIESIHRHNYIHRDIKPDNLLLDKNGHMKLSDFGLCKPLDSITLSALHENKVMDDGNLAEPMDIDNNRSSWKSPSEQLHHWQMNRRKLAFSTVGTPDYIAPEVLLKKGYGMECDWWSLGAIMYEMLVGYPPFYSDDPIATCRKIVHWKNQLKFPEDARLTIEAKDLICRLLCDVEHRLGTGGAYQIKAHPWFKDVVWDRLYEMEAAFKPEVNGELDTQNFMKFDELDPPIPGKRGSGPSRKMLLTPKDLSFVGYTYKNFDAVKGLQGSLDSHRLSLKQPPIDVLNGTGGDYTTELIANEAEMQMLAVSGDPMMP 515
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 83849529 83856436 + Hsped.01g19010.1 Hepe01g1901 561011
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe01g1901 515 FunFam Non-specific serine/threonine protein kinase 53 175 - -
Hepe01g1901 515 SUPERFAMILY Protein kinase-like (PK-like) 89 438 IPR011009 -
Hepe01g1901 515 ProSiteProfiles Protein kinase domain profile. 92 393 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Hepe01g1901 515 Gene3D Phosphorylase Kinase; domain 1 83 177 - -
Hepe01g1901 515 ProSiteProfiles AGC-kinase C-terminal domain profile. 394 467 IPR000961 GO:0004674(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Hepe01g1901 515 CDD STKc_NDR_like 90 458 - -
Hepe01g1901 515 FunFam Non-specific serine/threonine protein kinase 412 422 - -
Hepe01g1901 515 SMART serkin_6 92 393 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Hepe01g1901 515 ProSitePatterns Protein kinases ATP-binding region signature. 98 121 IPR017441 GO:0005524(InterPro)
Hepe01g1901 515 FunFam Non-specific serine/threonine protein kinase 176 243 - -
Hepe01g1901 515 ProSitePatterns Serine/Threonine protein kinases active-site signature. 211 223 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Hepe01g1901 515 Gene3D Transferase(Phosphotransferase) domain 1 178 410 - -
Hepe01g1901 515 Pfam Protein kinase domain 93 242 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Hepe01g1901 515 Pfam Protein kinase domain 284 393 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Hepe01g1901 515 SMART pkinase_C_6 394 459 IPR000961 GO:0004674(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Hepe01g1901 515 FunFam Non-specific serine/threonine protein kinase 292 411 - -
Hepe01g1901 515 PANTHER SERINE/THREONINE-PROTEIN KINASE 25 461 IPR050236 GO:0004674(PANTHER)|GO:0018105(PANTHER)|GO:0035556(PANTHER)
Hepe01g1901 515 Pfam Protein kinase C terminal domain 412 457 IPR017892 GO:0004674(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Hepe01g1901 515 CDD MobB_NDR_LATS-like 26 87 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe01g1901 Hepe-Chr1:83849529 Hepe03g0290 Hepe-Chr3:3869954 7.32e-228 dispersed
Hepe03g2097 Hepe-Chr3:78932258 Hepe01g1901 Hepe-Chr1:83849529 6.74e-167 transposed
Hepe04g2071 Hepe-Chr4:75535640 Hepe01g1901 Hepe-Chr1:83849529 1.25e-222 transposed
Hepe06g1326 Hepe-Chr6:63443713 Hepe01g1901 Hepe-Chr1:83849529 8.43e-70 transposed
Hepe07g2572 Hepe-Chr7:70177967 Hepe01g1901 Hepe-Chr1:83849529 1.58e-75 transposed
Hepe08g1281 Hepe-Chr8:14007229 Hepe01g1901 Hepe-Chr1:83849529 9.85e-207 transposed
Hepe01g1901 Hepe-Chr1:83849529 Hepe09g0892 Hepe-Chr9:8937139 8.57e-276 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
72484 PF00069 Pkinase 3.30E-43 CL0016 Hepe PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe01g1901 K08790 - csv:101212228 1000.35