Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe01g1904 ATGAGGGGCGTCAACAACAGAACCAAGGGATCGGCGTCCGGAACCGCCGGAAAATCAGAAAACCGGCGGATGAGCAACGCCGAGCGTTCGGAATACTTCGCGAGGAGAGAGGCGGCGAAGATATTGCGGCGTGTTCTCGAAGGAGATGCTCAACGTCGAGCCGTCGCCTCCATCAAATCACTCGTTTATGCTCCATCTGTTAGGAATAAGAAGGGTACCTTCGCTCTTGTTTGCAAGACACTCAAATACCTCCCCGTAATCAAGGACGTACTGGAGGCTGCCGATTTGTTGAGCAGCAAATGGAAGAGGCAGAAGGAATTAATTTATGTCGTTATGTATGATATCCTCCTTGGCCAGAAAACTCCTGCAGTTGGTGATGCAGAGAAGTTTCTCATGCGGCAGCAAAGTGCTTTACAATCTGTGGTTACACAGCTTTTGTCAAAGAGAAAAGTAAAAAATATTGAAGATTTAATAGGTTGTGGTGTAAATCCTGGTGTTTCAAAGCCTCGTTTTATCCGTGTGAATACTTTGAAGATGGATGTTCACACAGCAATAAACGAATTAGGCAAAAAATATGCAGTCCAGAAGGATGACATGGTTCCTGACCTCTTGGTACTTCCTCCAGGCAGTGATTTACATAATCATCCTCTGGTTGCAAATGGGAGTATCTTCATGCAAGGGAAGGCTAGTTCTATGGTTGCAGTAGCCCTTGATCCCAAGCCAGGATGGGAAGTCCTTGATGCATGTTCAGCTCCGGGTAACAAAACTGTCCACCTTGCCTCTCTCATGAATGGAAAAGGAAGGATCATAGCATGTGAATTAAATGAAAACAGGGTCAGACGCTTACAAGATACTATCAAACTATCTGGAGCCTCTAATATAGAAGTTTTGCATGGAGACTTCCTTACTCTTAATCCAGAAGATCCTTCATTATCCAAAGTCCGTGCCATTCTTTTGGATCCTTCCTGCTCTGGATCTGGAACTGCAGCTGCTAGATTAGATCATTTGCTCCCCTCACATGTTGAAGGGAAGACCTCTGAGGATGTTGACCTTGAACGACTGAACAAACTCGCTGGCTTTCAGAGAAAGGCTCTAGCACATGCATTTTCCTTTCCAGCCGTAGAGAAAATTGTTTACAGCACTTGTTCCATTCATCAAGTTGAAAACGAAGATGTTGTCCAGTCATTGTTACCTCTTGCTGAATCGCATGGTTTTCAACTGGAAACTCCGTTCCCAAAGTGGCAGCGGCGAGGTCTCCCGATTTTCGCAGGCGCTAACCATTTACTTCGAACCGATCCTATCGAGGACAAAGAAGGATTCTTCATAGCTCTATTTAAGAAGCAGCAGGACACGACACACCCATTTCCCGGAACTTCAATTAGAGACAAAAGCTCTAGAAATCCTGGTGGAAATGGCAGAAACCGTTGGGCAGTAACATACCCTCCTACCAGGATGTCCAAAATGTGGTTGTATGCACATTCGATAAGGACACGATGGAGAAAGAACCGCACTCCATCCAGAAGTAGAACAAGAACTTGA 1539 45.42 MRGVNNRTKGSASGTAGKSENRRMSNAERSEYFARREAAKILRRVLEGDAQRRAVASIKSLVYAPSVRNKKGTFALVCKTLKYLPVIKDVLEAADLLSSKWKRQKELIYVVMYDILLGQKTPAVGDAEKFLMRQQSALQSVVTQLLSKRKVKNIEDLIGCGVNPGVSKPRFIRVNTLKMDVHTAINELGKKYAVQKDDMVPDLLVLPPGSDLHNHPLVANGSIFMQGKASSMVAVALDPKPGWEVLDACSAPGNKTVHLASLMNGKGRIIACELNENRVRRLQDTIKLSGASNIEVLHGDFLTLNPEDPSLSKVRAILLDPSCSGSGTAAARLDHLLPSHVEGKTSEDVDLERLNKLAGFQRKALAHAFSFPAVEKIVYSTCSIHQVENEDVVQSLLPLAESHGFQLETPFPKWQRRGLPIFAGANHLLRTDPIEDKEGFFIALFKKQQDTTHPFPGTSIRDKSSRNPGGNGRNRWAVTYPPTRMSKMWLYAHSIRTRWRKNRTPSRSRTRT 512
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 83874180 83879564 + Hsped.01g19040.1 Hepe01g1904 561014

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Hepe01g1904 512 Gene3D Sun protein; domain 3 160 225 - -
Hepe01g1904 512 MobiDBLite consensus disorder prediction 1 21 - -
Hepe01g1904 512 FunFam Putative 28S rRNA (Cytosine-C(5))-methyltransferase 162 225 - -
Hepe01g1904 512 PANTHER NOP2 YEAST -RELATED NOL1/NOP2/FMU SUN DOMAIN-CONTAINING 34 450 IPR023267 GO:0001510(PANTHER)|GO:0001510(InterPro)|GO:0005730(PANTHER)|GO:0008173(InterPro)|GO:0070475(PANTHER)
Hepe01g1904 512 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 183 447 IPR029063 -
Hepe01g1904 512 FunFam Methyltransferase NSUN5, putative 226 453 - -
Hepe01g1904 512 Pfam NOL1/NOP2/Sun domain family member 5, ferredoxin-like domain 195 226 IPR049561 -
Hepe01g1904 512 MobiDBLite consensus disorder prediction 452 478 - -
Hepe01g1904 512 CDD AdoMet_MTases 245 333 - -
Hepe01g1904 512 PRINTS RNA (C5-cytosine) methyltransferase signature 246 256 IPR023267 GO:0001510(InterPro)|GO:0008173(InterPro)
Hepe01g1904 512 PRINTS RNA (C5-cytosine) methyltransferase signature 315 327 IPR023267 GO:0001510(InterPro)|GO:0008173(InterPro)
Hepe01g1904 512 PRINTS RNA (C5-cytosine) methyltransferase signature 430 447 IPR023267 GO:0001510(InterPro)|GO:0008173(InterPro)
Hepe01g1904 512 PRINTS RNA (C5-cytosine) methyltransferase signature 374 390 IPR023267 GO:0001510(InterPro)|GO:0008173(InterPro)
Hepe01g1904 512 Pfam NOL1/NOP2/Sun domain family member 5, N-terminal domain 73 158 IPR048889 -
Hepe01g1904 512 Gene3D Vaccinia Virus protein VP39 226 454 IPR029063 -
Hepe01g1904 512 Pfam 16S rRNA methyltransferase RsmB/F 235 445 IPR049560 -
Hepe01g1904 512 MobiDBLite consensus disorder prediction 1 28 - -
Hepe01g1904 512 MobiDBLite consensus disorder prediction 452 472 - -
Hepe01g1904 512 ProSiteProfiles SAM-dependent MTase RsmB/NOP-type domain profile. 160 448 IPR001678 GO:0008168(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe01g1904 K15264 - - csv:101212715 846.654
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g124 Blo01g01455 . . . . . . Bma01g02203 . . . . Car09g00303 . . . Cpe06g00251 . . . . . . . Cla05g01855 Cam05g1978 Cec05g1991 Cco05g2049 Clacu05g1970 Cmu05g1852 Cre05g1977 . Cone7ag1601 . . Lsi04g01403 . . . . . . . . . . . . . Cmo09g00354 Cma09g00354 . . . . Cpe02g00278 Bhi09g03108 . . . Hepe01g1904 Mch11g0437 . . . . . . . . . . . Cme07g00198
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008710 0 4 1 1 0 1 1 1 1 1 1 1 2 1 0 1 1 1 2 1 1 1 1 1 1 1 1 2 1 1 33