Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe01g1905 ATGGACGTAGCCAACCCAATATTCCTCAACGTCCTCCACGACCTTCTGGACTTCGCCGACGAGCCAGGGCAGAGCACCCACCACGCGCCGTCACGTGCGTACGTGAGGGACACGAAGGCGATAGCGGCGACTCCGGCCGACGTGGTCGAGTATCCAAACGCGTACCAATTCACCATCGACATGCCTGGCCTCAAAATGGATCAAATCAAGGTCCAAATTGAGGACAATCAGTTGGTTGTGAGCGGCGAGAGGAAGAGGGAAAGTGAAAAGGTGAAGGAGGGAAAATATGTGAGAATGGAGAGGAGGCTGGGTAAATACTTGAAGAATTTTGTGCTGCCGGAAACCGCCGACACCGACAAAGTGTCGGCGGCGTACCAGGACGGTGTGCTGTCGGTCACGGTGGAGAAGAAGCCGCCGCCGGAGCCCAAAAAGGCTAAGAATATTGAGAACTCAAACGAGGAATACTTTCGAAGCTCCTGGAAGCTGGAACCTCCTTCCAGCTCTTCTCCATCCTTCCAGAAAATTCCTCATTCACAACACAACACAACTATAAAAACGAACCAACCATTCTCCATTCGCCACAAGCAAAAAACATTTCCTACGACCAAAATCTACCATCCAACCCACACTCTTTTCTGTGTTCTTTTCCCTTCATCATCATCAAACATTTATCCCATTAACAAGAGAAAAATGGATCTCAGAATCATGGGCCTAGACTCCCCAATCTTCTCCACCCTCCACCAAGTGATGGATCTCGCCGACGAGCCCGAGAAGTCGTTCAATGCCCCGACGCGCACCTACGTCCGGGACACCAAGGCCATGGCAGCCACTCCGGCCGACATCAAGGAGTATCCGAACTCCTACGTTTTCGTCGTCGACATGCCGGGGCTGAAGGTCGGCGACATCAAGGTTCAGGTTGAGGACGACAATGTGCTACTGATAAGCGGCGAGAGGAAGAGGGAGGAGGAGAAAGAGGGGGCTAAGTATGTGAGAATGGAGAGGAGAGTTGGAAAGTTTATGAGGAAATTTGTGTTGCCGGAAAATGCCAACATTGATGCCATCTCGGCGGTTTGCCAGGACGGTGTGCTCAATGTGACTGTGCAGAAGTTGCCACCACCTGAGCCTAAGAAGCCTAAGATCGTTGAGGTCAAGATTAACTGA 1161 51.68 MDVANPIFLNVLHDLLDFADEPGQSTHHAPSRAYVRDTKAIAATPADVVEYPNAYQFTIDMPGLKMDQIKVQIEDNQLVVSGERKRESEKVKEGKYVRMERRLGKYLKNFVLPETADTDKVSAAYQDGVLSVTVEKKPPPEPKKAKNIENSNEEYFRSSWKLEPPSSSSPSFQKIPHSQHNTTIKTNQPFSIRHKQKTFPTTKIYHPTHTLFCVLFPSSSSNIYPINKRKMDLRIMGLDSPIFSTLHQVMDLADEPEKSFNAPTRTYVRDTKAMAATPADIKEYPNSYVFVVDMPGLKVGDIKVQVEDDNVLLISGERKREEEKEGAKYVRMERRVGKFMRKFVLPENANIDAISAVCQDGVLNVTVQKLPPPEPKKPKIVEVKIN 386
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 83879930 83882119 - Hsped.01g19050.1 Hepe01g1905 561015

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Hepe01g1905 386 Gene3D - 239 384 IPR008978 -
Hepe01g1905 386 Gene3D - 7 149 IPR008978 -
Hepe01g1905 386 CDD ACD_sHsps-like 47 134 - -
Hepe01g1905 386 SUPERFAMILY HSP20-like chaperones 28 145 IPR008978 -
Hepe01g1905 386 ProSiteProfiles Small heat shock protein (sHSP) domain profile. 270 386 IPR002068 -
Hepe01g1905 386 Pfam Hsp20/alpha crystallin family 280 384 IPR002068 -
Hepe01g1905 386 Pfam Hsp20/alpha crystallin family 48 149 IPR002068 -
Hepe01g1905 386 PANTHER HEAT-SHOCK PROTEIN 20 FAMILY MEMBER 253 381 IPR031107 GO:0006457(PANTHER)|GO:0009408(PANTHER)|GO:0009651(PANTHER)|GO:0042542(PANTHER)|GO:0043621(PANTHER)|GO:0051082(PANTHER)|GO:0051259(PANTHER)
Hepe01g1905 386 FunFam 17.3 kDa class II heat shock protein-like 241 385 - -
Hepe01g1905 386 ProSiteProfiles Small heat shock protein (sHSP) domain profile. 37 151 IPR002068 -
Hepe01g1905 386 FunFam 17.3 kDa class II heat shock protein-like 7 151 - -
Hepe01g1905 386 SUPERFAMILY HSP20-like chaperones 245 380 IPR008978 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe01g1905 K13993 - - csv:101213192 246.128
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe01g1905 Hepe-Chr1:83879930 Hepe04g0803 Hepe-Chr4:62079857 2.42e-26 dispersed
Hepe02g0063 Hepe-Chr2:732597 Hepe01g1905 Hepe-Chr1:83879930 8.89e-09 transposed
Hepe01g1905 Hepe-Chr1:83879930 Hepe08g1411 Hepe-Chr8:16690694 5.60e-20 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g130 . . . . . . . . . . Cma01g01714 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Sed05g1780 . . . . . . . . Bhi09g03104 Tan01g4592 Cmetu07g0720 . Hepe01g1905 Mch11g0438 . . . . . . . . . . . Cme07g00197
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001297 3 2 4 4 3 2 2 2 2 1 1 2 3 2 2 3 2 3 3 2 1 2 1 3 2 2 3 3 2 7 74