Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe01g1906 ATGAGCCTGGATGCAGCTGAGGATGAATCAACTTCTGAAATCCATATTCCAGCAGAGATTGATTGGGATATGTTAGACAAATCCAAATTCTTTTTTCTGGGTGCTGCTTTATTTTCAGGTGTATCAACTGCTCTTTATCCTATTGTTGTTTTGAAAACTCGACTTCAGGTTTCTGCTACCAAGCTATCAAGCTTTAAAATGTCATATTCTATCATGCGCCATGAAGGCTTAAGAGGGTTTTACAGAGGCTTTGGAACCTCTTTAATGGGAACTATCCCAGCTCGAGCCTTTTACATGGCAGCTCTTGAAGTCACCAAGAGTGGCGTTGGAAGTGCAACGGTTAGGCTAGGCTTTTCAGACACCTCAGCCATGGCTATAGCTAATGGGGCTGCAGGGTTGAGCTCAGCCATGGCTGCTCAATTGGTCTGGACTCCAATAGATGTTGTAAGCCAAAGACTAATGGTTCAGGGCTGCAATATCAGTGCTAAAAACAGTGTTTCTAATCTTAATTCTTGTGTCTATAAAAATGGTATTGACGCTTTCAGAAAGATCATTTATGCTGATGGTTTTCCGGGATTATACAGGGGATTTGGGATTTCAATTTTGACATATGCTCCATCAAATGCAGTTTGGTGGGCTTCTTACTCTGTAGCTCACAGGCTCATTTGGAGTGGTCTAGGCTACTACAGAAGTAAGAAGGATGAGAGTTGTATTAATGGTTTAGGCTATGGCTTTAAAGCAGATTCTAAGGCAACAATGGCAGTTCAGGGGTTGAGTGCAGCCTTGGCCAGTGGGGTTTCTGCTATCATAACAATGCCACTGGATACCATCAAGACTAGATTGCAAGTTTTGGATGGAGAAGAAAACGGCCAAAGACGCCCTCTAACGGCATTGCAGACCGTAAGGAACTTGATGAAGGAAGGCGGGCTGAACGCTTGTTATCGAGGGCTTGGCCCGAGATGGGCGTCGATGGCCATGTCAGCCACCACCATGATCACAACCTATGAGTTTCTCAAACGGCTATCTGCTAAGAACCTAGATTGTTCGAGCTGA 1053 44.35 MSLDAAEDESTSEIHIPAEIDWDMLDKSKFFFLGAALFSGVSTALYPIVVLKTRLQVSATKLSSFKMSYSIMRHEGLRGFYRGFGTSLMGTIPARAFYMAALEVTKSGVGSATVRLGFSDTSAMAIANGAAGLSSAMAAQLVWTPIDVVSQRLMVQGCNISAKNSVSNLNSCVYKNGIDAFRKIIYADGFPGLYRGFGISILTYAPSNAVWWASYSVAHRLIWSGLGYYRSKKDESCINGLGYGFKADSKATMAVQGLSAALASGVSAIITMPLDTIKTRLQVLDGEENGQRRPLTALQTVRNLMKEGGLNACYRGLGPRWASMAMSATTMITTYEFLKRLSAKNLDCSS 350
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 83884488 83889307 + Hsped.01g19060.1 Hepe01g1906 561016
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe01g1906 350 Pfam Mitochondrial carrier protein 251 343 IPR018108 -
Hepe01g1906 350 Pfam Mitochondrial carrier protein 39 108 IPR018108 -
Hepe01g1906 350 Pfam Mitochondrial carrier protein 126 222 IPR018108 -
Hepe01g1906 350 PRINTS Mitochondrial carrier protein signature 81 99 IPR002067 GO:0055085(InterPro)
Hepe01g1906 350 PRINTS Mitochondrial carrier protein signature 40 58 IPR002067 GO:0055085(InterPro)
Hepe01g1906 350 PRINTS Mitochondrial carrier protein signature 132 154 IPR002067 GO:0055085(InterPro)
Hepe01g1906 350 PANTHER MITOCHONDRIAL SUBSTRATE CARRIER FAMILY PROTEIN J 6 346 - -
Hepe01g1906 350 Gene3D Mitochondrial carrier domain 29 347 IPR023395 -
Hepe01g1906 350 ProSiteProfiles Solute carrier (Solcar) repeat profile. 123 221 IPR018108 -
Hepe01g1906 350 SUPERFAMILY Mitochondrial carrier 23 338 IPR023395 -
Hepe01g1906 350 ProSiteProfiles Solute carrier (Solcar) repeat profile. 26 108 IPR018108 -
Hepe01g1906 350 ProSiteProfiles Solute carrier (Solcar) repeat profile. 251 341 IPR018108 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe01g1906 Hepe-Chr1:83884488 Hepe02g3214 Hepe-Chr2:81683422 1.74e-83 dispersed
Hepe01g1906 Hepe-Chr1:83884488 Hepe03g1443 Hepe-Chr3:71193598 9.15e-158 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe01g1906 K15121 - csv:101213436 626.706