Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe01g1914 ATGGCGGCGGCAGCAGTACCGTCCACCACCACCACCTCCGTCCACATTCGCCGGAGCAACTTCCTCTCTCCGACCCCAAAAACCACCGTCATATCCTTCAACCCCATCACTTCCCTCCCAAAGCCGCTCAAATTCAGCATCAGAAACTCCAACGACTCATCGGCGGAGACCGCCGCAACAGAGACGGCGACTGAACCGGAGCCAGAAAGCTCACTCGAAGCCCCCGATGGATCGCCGTCTCTAATTTCGGCTCTCAACGTCGAACGAGCCCTCCGTGGGATTCCAATTACAGATGTGAATCACTACGGAACACTCGGGCTCCGAAGAGGATGTCCATATGATCAGGTTCCGATTGCGTACAACATCAAGGTTGAAGAACTAAAGAGCCAGGGATTAGAGGAAGAAGAACTCAACCAAAAACTCGAACTCCTAAAAGAATCGTACACAATATTGTCATCTGTTGACGAGAGAAGAATGTACGATTGGAGCTTGGCCAGAATCGGAGAACCAGAGAAATACACATGGCCGTTCGAGGCCGATATAACTCCGCTTCAAACACAATTGCAGCCGCCGAAGGAACCAGAAGACGAAGGACCGACGAGATTGGTGGGTTACTTCTTCTTGGGGTGGTTCGTTCTGTCCTTCGTGTTATCTATTGCTCTGAATCTGTAG 672 51.49 MAAAAVPSTTTTSVHIRRSNFLSPTPKTTVISFNPITSLPKPLKFSIRNSNDSSAETAATETATEPEPESSLEAPDGSPSLISALNVERALRGIPITDVNHYGTLGLRRGCPYDQVPIAYNIKVEELKSQGLEEEELNQKLELLKESYTILSSVDERRMYDWSLARIGEPEKYTWPFEADITPLQTQLQPPKEPEDEGPTRLVGYFFLGWFVLSFVLSIALNL 223
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 83946689 83947946 + Hsped.01g19140.1 Hepe01g1914 561024

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Hepe01g1914 223 MobiDBLite consensus disorder prediction 47 79 - -
Hepe01g1914 223 MobiDBLite consensus disorder prediction 1 20 - -
Hepe01g1914 223 FunFam NAD(P)H-quinone oxidoreductase subunit U chloroplastic 82 173 - -
Hepe01g1914 223 Gene3D DnaJ domain 96 171 IPR036869 -
Hepe01g1914 223 MobiDBLite consensus disorder prediction 47 67 - -
Hepe01g1914 223 Coils Coil 124 147 - -
Hepe01g1914 223 PANTHER NAD(P)H-QUINONE OXIDOREDUCTASE SUBUNIT U, CHLOROPLASTIC 4 222 IPR044199 GO:0009507(PANTHER)|GO:0009535(InterPro)|GO:0010598(PANTHER)|GO:0010598(InterPro)
Hepe01g1914 223 SUPERFAMILY Chaperone J-domain 99 165 IPR036869 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe01g1914 K23052 - - csv:101217656 351.673
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g149 . Blo12g01028 . . . . . . . . Cma01g01703 . . . . . . . . . . . . . Cla05g01624 Cam05g1734 Cec05g1742 Cco05g1799 Clacu05g1724 Cmu05g1608 Cre05g1737 . Cone7ag1612 . . Lsi04g01390 . . . . . . . . Bpe04g00113 . . Sed13g1903 Cmo01g01808 . . . Car01g01321 . . Cpe02g00288 Bhi09g03085 Tan01g3468 Cmetu07g0846 . Hepe01g1914 Mch11g0448 . . . . . . . . . . . Cme07g00179
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013610 0 1 1 0 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 26