Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe01g1916 ATGACGATTTGGTGCTGCTTATGCTTCACCGTTGGAGAAGAAGACGAAAGGGAAGAGGAACTGAAGATAGGTGAAATGAAGCCCATGCGTGAGGATGTTTTTGAGAACCCGGATGACCCTGATCACATTGTGCGAAATGACGATGATTCTGTAAGGAGTAACCCGCTTGCGATTGCTGTTGACGAGCCTGACCGCCGCGACGGTGATCGACTGAGATTGTTTGAGGATATGGTTAGAGCAATGCACGATGACGGAGGTGATGGTGCCACTCATTGGGACGATGAGCTGCGTGGCCGTGGTGTTGGTGTTGGTGGTGGTGTTGGCGCTATCAATCCTTGGAATTTTTCATTTGGAATTTTGCATCAGTCTGAGGGAGGTGAGAGTAGTAGCGCCTCGGCGGCGACGGCGTTGGCTTTGTCTTCTACAGTGGAGACTTCTAATGAGGAGCGTGATCGCGATGCCCACCATAAGCGCGCTAAAGTTCACTCCAAATTCAATGAGGGCTCCTTTGCAACTCCATGGCCGTTGGGTGCTGGAAATCCTATGAGAGATTATGATTTTAGTCATGGATCGTCTTCAATTATGATTAGGAATGATTTTTTCTATCATGCTTCTTCATCAAACAGAGTTGACGGCGACACAGAGTTTGAATCTAGTTTTGGTAAAGATGATGGGATAAATGAGAATGGGGCTTGTAAATCAGAGGGATCTGAAATAAGGATGGATCTTACAGATGATTTACTGCATATGGTTTTCTCTTTCTTGGATCACATCAATCTTTGTCGAGCTGCTATAGTCTGCAGGCAGTGGCGAGCTGCTAGTACTCATGAAGACTTCTGGAGGTGTTTGAATTTTGAAAATAGGAACATATCCATGGAACAGTTTGACGATATGTGTGGAAGATATCCAAATGCCACAGAGGTAAATATCTCTGGTGTACCTGCTGTTCACTTGCTTTCCATGAAAGCAGTTTCTTCTTTAAGAAATCTGGAGGTTTTAACTCTGGGGAGAGGACAACTGGGAGATACCTTTTTTCATGCCCTGGCTGCTTGCCACTTGTTGAAGAGCTTGACTGTCAATGATTCTACGCTAGTTAATGTTACACAAGAGATACCTATAAGCCACGATAGACTGCGCCATCTTCATCTTACTAAATGTCGTGTTATACGTATATCTGTTAGATGTCCACAACTTGAAACATTGTCTTTGAAGCGCAGCAACATGGCACAGGCTGTTCTTAATTGCCCTCTTCTTCATGACCTGGATATAGGCTCTTGCCACAAGCTCTCAGATGCTGCAATTCGCTCAGCAGCTATTTCGTGCCCACAATTGGAATCTCTTGATATGTCTAATTGTTCATGTGTTAGCGATGAGACATTACGTGAAATTGCTTCGACTTGCCCGAATCTCCAGCTTCTGAATGCATCATACTGCCCAAATATATCTTTGGAGTCTGTAAGACTGACAATGCTGACCGTGCTTAAGCTTCACAGCTGTGAGGGCATCACATCAGCTTCAATGACTGCAATATCTAGTAGTTCTAGGTTGAAGGTCTTGGAGCTTGATAATTGCAGTCTTTTGACTTCTGTGTCACTGGATCTTCCTCGTTTACAGAATATCAGACTTGTCCATTGCCGCAAATTCTCTGATTTGAGTTTACAGAGTGTTAAATTATCATCCATAATGGTCTCTAATTGTCCATCACTTCACCGGATCAACATCACCTCCAATTTACTTCAAAAATTAGTGTTGAAGAAACAAGAGAGCTTGACCAAATTGGTTTTGCAGTGTCCTAGTCTGCAAGATGTGGACCTCACAGACTGTGAGTCTCTAACAAATTCTATTTGTGAGGTTTTTAGTGATGGTGGTGGATGCCCTATGTTGAAATCACTTGTTCTTGATAACTGCGAGAGTTTGACAGCCGTTCGATTCTGTAGCAGATCTTTAGGAAGTCTTTCCCTTGTCGGTTGCCGGGCAATCACTTCACTTGAACTTCAATGTCCTAATCTTGAACAAGTTTCACTAGATGGCTGTGATCATCTCGAAAGAGCATCATTTTCCCCTGTTGGTCTGCGGTCACTAAACCTGGGAATCTGTCCCAAATTGACTGAATTAAGACTTGAGGCCCCTCGTATGGATTTACTTGAGCTGAAAGGCTGTGGTGGATTGTCTGAGGCAGCCATTAATTGTCCTCGTCTAACATCATTGGATGCTTCATTTTGTGGCCAACTGAAAGACGAGTGTTTGTCTGCAACGACTGCCTCATGTCCACAGATTGAGTCATTAATACTAATGTCATGTCCTTCGGTTGGTTCAGAGGGACTTTACTCTCTGCAATGTCTTCCGAAGTTGGTTGTGCTTGATTTATCATATACATTTTTGATGAGTTTACAGCCAGTCTTTGAGTCTTGTGTTCAACTCAAGGTATTGAAACTTCAAGCATGCAAGTATTTAACTGACTCATCACTTGAGCCTCTTTACAAGGAAGGTGCTCTTCCAGCTCTACAGGAGTTAGACTTGTCTTACGGGACACTTTGTCAGTCTGCCATAGAAGAGCTTCTTGCTTGTTGCACGCACTTAACTCACGTGAGCTTAAATGGGTGTGTGAACATGCATGATCTAAATTGGGGTTGCAACATTGGGCAGCTGTCTTTGTCCGGCATCCCCATTCCTCTTGGTCCGGCCACTCTTGATGATATCGAGGAACCAGTTGCACAGCCAAACCGTTTGTTACAGAATCTTAACTGTGTAGGTTGTCAAAATATTAGGAAGGTTCTCATTCCTCCAGCCGCACGCTGTTTTCATTTATCATCATTAAACCTATCTCTGTCTGCAAATCTCAAGGAAGTTGACGTTTCTTGTTACAACCTATGCTTTCTTAACTTGAGCAATTGTTGCTCTCTGGAAGTTTTGAGACTCGACTGCCCGAGGCTGACCAGTCTCTTTCTCCAGTCTTGCAACATTGAGGAAGAAGCGGTTGAAGCTGCGGTATCGAAATGTAGCATGCTTGAGACATTAGATGTCCGCTTTTGTCCTAAGATCTCGTCGATTAGCATGGTACAACTGCGTATTGCTTGCCCGAGTTTGAAGCGGATCTTCAGCAGTCTGTCTCCAACATGA 3120 43.94 MTIWCCLCFTVGEEDEREEELKIGEMKPMREDVFENPDDPDHIVRNDDDSVRSNPLAIAVDEPDRRDGDRLRLFEDMVRAMHDDGGDGATHWDDELRGRGVGVGGGVGAINPWNFSFGILHQSEGGESSSASAATALALSSTVETSNEERDRDAHHKRAKVHSKFNEGSFATPWPLGAGNPMRDYDFSHGSSSIMIRNDFFYHASSSNRVDGDTEFESSFGKDDGINENGACKSEGSEIRMDLTDDLLHMVFSFLDHINLCRAAIVCRQWRAASTHEDFWRCLNFENRNISMEQFDDMCGRYPNATEVNISGVPAVHLLSMKAVSSLRNLEVLTLGRGQLGDTFFHALAACHLLKSLTVNDSTLVNVTQEIPISHDRLRHLHLTKCRVIRISVRCPQLETLSLKRSNMAQAVLNCPLLHDLDIGSCHKLSDAAIRSAAISCPQLESLDMSNCSCVSDETLREIASTCPNLQLLNASYCPNISLESVRLTMLTVLKLHSCEGITSASMTAISSSSRLKVLELDNCSLLTSVSLDLPRLQNIRLVHCRKFSDLSLQSVKLSSIMVSNCPSLHRINITSNLLQKLVLKKQESLTKLVLQCPSLQDVDLTDCESLTNSICEVFSDGGGCPMLKSLVLDNCESLTAVRFCSRSLGSLSLVGCRAITSLELQCPNLEQVSLDGCDHLERASFSPVGLRSLNLGICPKLTELRLEAPRMDLLELKGCGGLSEAAINCPRLTSLDASFCGQLKDECLSATTASCPQIESLILMSCPSVGSEGLYSLQCLPKLVVLDLSYTFLMSLQPVFESCVQLKVLKLQACKYLTDSSLEPLYKEGALPALQELDLSYGTLCQSAIEELLACCTHLTHVSLNGCVNMHDLNWGCNIGQLSLSGIPIPLGPATLDDIEEPVAQPNRLLQNLNCVGCQNIRKVLIPPAARCFHLSSLNLSLSANLKEVDVSCYNLCFLNLSNCCSLEVLRLDCPRLTSLFLQSCNIEEEAVEAAVSKCSMLETLDVRFCPKISSISMVQLRIACPSLKRIFSSLSPT 1039
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 83978316 83986748 + Hsped.01g19160.1 Hepe01g1916 561026

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Hepe01g1916 1039 Gene3D - 239 280 - -
Hepe01g1916 1039 SUPERFAMILY F-box domain 242 273 IPR036047 GO:0005515(InterPro)
Hepe01g1916 1039 Gene3D Ribonuclease Inhibitor 556 721 IPR032675 -
Hepe01g1916 1039 SMART fbox_2 243 283 IPR001810 GO:0005515(InterPro)
Hepe01g1916 1039 SUPERFAMILY RNI-like 263 482 - -
Hepe01g1916 1039 FunFam F-box/LRR-repeat protein 15 isoform C 894 1035 - -
Hepe01g1916 1039 ProSiteProfiles F-box domain profile. 237 283 IPR001810 GO:0005515(InterPro)
Hepe01g1916 1039 Gene3D Ribonuclease Inhibitor 281 409 IPR032675 -
Hepe01g1916 1039 SUPERFAMILY L domain-like 727 1033 - -
Hepe01g1916 1039 Gene3D Ribonuclease Inhibitor 722 797 IPR032675 -
Hepe01g1916 1039 FunFam F-box/LRR-repeat protein 15 797 882 - -
Hepe01g1916 1039 PANTHER OS10G0396666 PROTEIN 230 1033 - -
Hepe01g1916 1039 CDD F-box_FBXO41 245 281 - -
Hepe01g1916 1039 SMART LRR_CC_2 975 999 IPR006553 -
Hepe01g1916 1039 SMART LRR_CC_2 488 513 IPR006553 -
Hepe01g1916 1039 SMART LRR_CC_2 857 888 IPR006553 -
Hepe01g1916 1039 SMART LRR_CC_2 534 559 IPR006553 -
Hepe01g1916 1039 SMART LRR_CC_2 597 622 IPR006553 -
Hepe01g1916 1039 SMART LRR_CC_2 1000 1025 IPR006553 -
Hepe01g1916 1039 SMART LRR_CC_2 467 487 IPR006553 -
Hepe01g1916 1039 SMART LRR_CC_2 415 440 IPR006553 -
Hepe01g1916 1039 SMART LRR_CC_2 667 697 IPR006553 -
Hepe01g1916 1039 SMART LRR_CC_2 730 755 IPR006553 -
Hepe01g1916 1039 SMART LRR_CC_2 441 466 IPR006553 -
Hepe01g1916 1039 SMART LRR_CC_2 625 663 IPR006553 -
Hepe01g1916 1039 SMART LRR_CC_2 804 829 IPR006553 -
Hepe01g1916 1039 SMART LRR_CC_2 756 781 IPR006553 -
Hepe01g1916 1039 SUPERFAMILY RNI-like 523 822 - -
Hepe01g1916 1039 Gene3D Ribonuclease Inhibitor 410 555 IPR032675 -
Hepe01g1916 1039 Gene3D Ribonuclease Inhibitor 798 1038 IPR032675 -
Hepe01g1916 1039 MobiDBLite consensus disorder prediction 141 161 - -
Hepe01g1916 1039 FunFam F-box/LRR-repeat protein 15 235 485 - -
Hepe01g1916 1039 Pfam F-box-like 245 285 IPR001810 GO:0005515(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe01g1916 - - - - 0.0
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g161 . . . . Bpe02g01559 . . . . . . . Car09g00313 . . . Cpe06g00258 . . . . . . . Cla05g01626 . . . Clacu05g1726 . Cre05g1739 . . . . Lsi04g01388 . . . Blo17g00273 Blo18g00056 Bda01g01346 Bda13g01586 Bpe14g00280 . Bma01g00911 Bma02g00548 Sed05g1794 Cmo01g01810 . . . Car01g01319 . . Cpe02g00290 Bhi09g03083 Tan01g3471 Cmetu07g1629 . Hepe01g1916 Mch11g0451 . . . . . . . . . . . Cme07g00176
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004724 2 1 1 2 2 1 2 1 1 1 1 1 2 1 1 1 1 4 2 1 1 1 1 1 1 1 1 4 1 1 42