Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe01g1920 ATGCAGGCGCTTGCTGTGCTAGATTTGAGCTGCAACATGTTAACTGGTTCAATCCCCTCTATCTTAGGGAATTTGACTTACACTGAGAAACTGTACTTGCATAGTAACAAGTTCACTGGGTCCATTCCGCCAGAGCTCGGGAATATGACGAAGCTCCATTATCTGGAACTGAATGATAATCATCTTACTGGGAATATTCCACCCGAGCTTGGGAAACTCACTGATTTGTTCGATCTAAATGTTGCAAATAACAACCTTGGAGGGCCTATCCCTGATAATCTTAGCTCATGCACAAATCTTAACAGCCTAAATGTGCACGGCAATAAGTTGAATGGAACTATTCCGCCGTCTTTCCAGAGGCTAGAGAGTATGACTTACTTGAATCTCTCCTCAAATGACCTACGAGGTCCGATTCCAGTTGAGCTGTCTCGTATTGGAAATTTGGATACGTTAGACATTTCAAATAACAAGATTAGCGGCACAATTTCTTCATCCTTCGGCGATCTGGAACATCTCCTAAAGTTAAATTTAAGCAGGAATCATTTAACAGGATTTATTCCAGCTGAATTTGGTAATTTAAGGAGTGTAATGGAAATAGATATTTCACACAATCAGCTCTCTGGGTTCATTCCTCAAGAACTGAGTCAACTTCAAAATCTGCTCTCCTTGAGACTTGAAAGCAACAATTTATCTGGGGACGTGACGTCGCTGATTAACTGCCTAAGTCTTACCGAATTAAACGTATCTTATAACAATCTAGCTGGTGACATTCCCACAAGCAACAATTTCTCTAGGTTTTCATCTGACAGTTTCCTTGGAAATCTTGCCCTCTGTGGATATTGGAATAGCAACAACTATCCCTGTCATGAAGTTCATCCGACAGAACGAGTGACAATATCTAAAGCCGCTATCCTGGGAATTGCTCTTGGTGCCGTTGTGATTCTACTAATGATCCTCCTAACGGTGTGCCGTCCAAACAATACAATACCTTTTCCAGATGGATCACTTGATAAACCAGTTACTTACTCGACTCCCAAGCTAGTGATCCTTCACATGAATATGGCACTGCATGTGTATGAGGATATTATGAGGATGACTGAAAATTTGAGCGAAAAGTACATAATCGGATATGGAGCTTCAAGTACAGTCTACAAATGTGTACTGAAGAATTGCAAACCTGTGGCTGTCAAAAAGCTCTACTCTCACCAGCCCAATAGCATGAAGGAATTCGAGACCGAACTCGAAACCATGGGTAGCATCAAGCACAGGAATCTAGTCAGCCTCCAAGGATACTCCTTGTCCCCCTCTGGGAATCTCCTCTTCTATGACTACATGGAAAATGGCAGCCTTTGGGATCATCTACATGGCTCTTCTAGCTCTACCAAGAAGAAGAAGCTAGACTGGGACACTCGGCTTAATATTGCACATGGAGCAGCCCAAGGACTATCATATCTACACCATGATTGTAGCCCTCGCATTATCCACAGGGATGTCAAGTCATCAAACATTCTATTAGACAAGGATTTTGAATCCCATCTCACTGATTTCGGCATTGCCAAGAGTTTATGCACCTCGAAGACATATACGTCCACTTATATCATGGGAACCATTGGATACATCGATCCAGAGTATGCTCGGACTTCCCGACTTACCGAAAAGTCTGATGTTTACAGCTTTGGCATTGTGTTACTTGAATTGCTCACAGGAAGGAAAGCTGTGGACAATGAATCAAATCTCCACCAATTGATCCTATCAAAGACAGCCAACAATGCTGTAATGGAGACAGTTGATCCTGAAATAACTGCAACTTGCAAGGACCTTGGAGCTGTAAAGAAGGCATTTCAGCTTGCTCTCCTATGCACCAAGAGGCAGCCATCCGATCGTCCAACAATGCACGAAGTAACGCGCGTCATCGAGAGTCTTCTGCCCTCGGCCACACCACTAAAGCAAACACCAACCATAACATCCATGACCCCATCTGCAAAATTCCCTTGCTACAAAGACGAGTATGCAAATTTAAAAACGCCGCACGTGCTGAACTGCCCGTCCATGAGCACCTCAGACGCCCAGCTCTTCCTCAAGTTCGGAGAGGTCATATCACAGAACAGTGAGTAA 2115 43.5 MQALAVLDLSCNMLTGSIPSILGNLTYTEKLYLHSNKFTGSIPPELGNMTKLHYLELNDNHLTGNIPPELGKLTDLFDLNVANNNLGGPIPDNLSSCTNLNSLNVHGNKLNGTIPPSFQRLESMTYLNLSSNDLRGPIPVELSRIGNLDTLDISNNKISGTISSSFGDLEHLLKLNLSRNHLTGFIPAEFGNLRSVMEIDISHNQLSGFIPQELSQLQNLLSLRLESNNLSGDVTSLINCLSLTELNVSYNNLAGDIPTSNNFSRFSSDSFLGNLALCGYWNSNNYPCHEVHPTERVTISKAAILGIALGAVVILLMILLTVCRPNNTIPFPDGSLDKPVTYSTPKLVILHMNMALHVYEDIMRMTENLSEKYIIGYGASSTVYKCVLKNCKPVAVKKLYSHQPNSMKEFETELETMGSIKHRNLVSLQGYSLSPSGNLLFYDYMENGSLWDHLHGSSSSTKKKKLDWDTRLNIAHGAAQGLSYLHHDCSPRIIHRDVKSSNILLDKDFESHLTDFGIAKSLCTSKTYTSTYIMGTIGYIDPEYARTSRLTEKSDVYSFGIVLLELLTGRKAVDNESNLHQLILSKTANNAVMETVDPEITATCKDLGAVKKAFQLALLCTKRQPSDRPTMHEVTRVIESLLPSATPLKQTPTITSMTPSAKFPCYKDEYANLKTPHVLNCPSMSTSDAQLFLKFGEVISQNSE 704
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 84021135 84027148 + Hsped.01g19200.1 Hepe01g1920 561030
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe01g1920 704 Pfam Protein kinase domain 372 635 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Hepe01g1920 704 ProSitePatterns Serine/Threonine protein kinases active-site signature. 493 505 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Hepe01g1920 704 Gene3D Phosphorylase Kinase; domain 1 339 444 - -
Hepe01g1920 704 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 186 639 IPR050647 GO:0001558(PANTHER)|GO:0010286(PANTHER)
Hepe01g1920 704 Pfam Leucine rich repeat 147 206 IPR001611 GO:0005515(InterPro)
Hepe01g1920 704 CDD STKc_IRAK 375 641 - -
Hepe01g1920 704 SMART LRR_typ_2 193 217 IPR003591 -
Hepe01g1920 704 SMART LRR_typ_2 1 24 IPR003591 -
Hepe01g1920 704 SMART LRR_typ_2 121 145 IPR003591 -
Hepe01g1920 704 SMART LRR_typ_2 169 192 IPR003591 -
Hepe01g1920 704 SMART LRR_typ_2 49 73 IPR003591 -
Hepe01g1920 704 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 340 444 - -
Hepe01g1920 704 Gene3D Transferase(Phosphotransferase) domain 1 445 653 - -
Hepe01g1920 704 FunFam LRR receptor-like serine/threonine-protein kinase ERL1 2 290 - -
Hepe01g1920 704 SUPERFAMILY Protein kinase-like (PK-like) 346 637 IPR011009 -
Hepe01g1920 704 SUPERFAMILY L domain-like 4 279 - -
Hepe01g1920 704 ProSiteProfiles Protein kinase domain profile. 369 642 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Hepe01g1920 704 Pfam Leucine Rich Repeat 51 73 IPR001611 GO:0005515(InterPro)
Hepe01g1920 704 Pfam Leucine Rich Repeat 29 49 IPR001611 GO:0005515(InterPro)
Hepe01g1920 704 Pfam Leucine Rich Repeat 4 25 IPR001611 GO:0005515(InterPro)
Hepe01g1920 704 Pfam Leucine Rich Repeat 242 260 IPR001611 GO:0005515(InterPro)
Hepe01g1920 704 Pfam Leucine Rich Repeat 99 121 IPR001611 GO:0005515(InterPro)
Hepe01g1920 704 Pfam Leucine Rich Repeat 124 143 IPR001611 GO:0005515(InterPro)
Hepe01g1920 704 Gene3D Ribonuclease Inhibitor 1 289 IPR032675 -
Hepe01g1920 704 SMART serkin_6 369 642 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Hepe01g1920 704 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 445 649 - -
Hepe01g1920 704 ProSitePatterns Protein kinases ATP-binding region signature. 375 398 IPR017441 GO:0005524(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe01g1920 Hepe-Chr1:84021135 Hepe07g2279 Hepe-Chr7:67118446 1.15e-71 dispersed
Hepe01g1920 Hepe-Chr1:84021135 Hepe06g1283 Hepe-Chr6:62800840 5.93e-144 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
72486 PF00069 Pkinase 8.50E-47 CL0016 Hepe PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe01g1920 K20718 - csv:101214398 1305.81