Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe01g1928 ATGCCCCTCATCAACGCCGCCGCCCACCGCCACCACCAGCCAACTGCATCCCAATCACCTCAATTCCACATACCTACTAATGCTGCCGATGACGACGACGACGATTTTCTTCCTTCCACCCAGACAGTCCTCTCCTCGCGATCTTCAACCTCGCAAAAACCCCTCTCGACCTCCGACTTATCGCTTCACATTCGCGCTCCCAAGAGGCCGAAGCGTTCTGCTCCGATGGCCACTGTATTCGGATCCTCGGAAATTGATTTGGGTTGCAGTTTGGATTTGATACAGCCGAGCATTGTTGGCTGTAGTTACGAAACTCATGATGCAAACTGGGGAGAGGAGATTTTCGACGGGGATGATGATTTTTCTGGTGCGACGGATGAATGCAAGGGGTCGAAGGTAAACGGAGGCTACTTATGCAATTCGATTGAATCTAGGTTAATTAATTCGAGAGTAGATTGCGATGTTGGCGTCAGTGGCAGCGATGATTTTGAGTCGGATGCAGAGTTAGAGTTGTTGCTTAATCTGCATTCGCAACTGGATGAGGAAGACCGTATTAGTGGAGTGGGATTTCATACTGAGGAAACAGATTTTCCAGTGGATGAAGAAGAAGGTTTGATTCAATGTCCTCTATGTGGGGTTGATATTTCAGATCTTAGCGACGAGCAACGTCTTGTACACACCAATGATTGTATTGACAAAGAGGACGCGCAAGCTCAAAATGGTGCTCTCACCTCTGATAAAAAGCAAACTTTAGGTCCTCAGCAATCTGGTGATAGTTCCAGATTTTCAACTGTTCTCAAATGGTTGCACGGTGTTGGTTTATCGAAATATGAAGACATTTTTGTTAGGGAGGAGATCGATTGGGACACATTACAGTGGTTGACAGATGAGGATCTCAATAATATGGGTATTACTGCACTTGGCCCCCGAAGGAAGATCACACATGCTCTCTCCGAACTCAGAAAAGAATTTTCTGCAGTTGAAACTTGCACGAATTCACATGCCCCTTCTGGTACTGGGCAGCAGAGTAACATTGGTTCAGATGGGCGTGAAAGATCAATCAATGGAACTAATAAAACACCTGCGAACAAGTTGATCACTGATTATTTCCCAGGATTTTCCACTAATAAGAAGAATGCATGCAACATCTCCAGTGGCAAGTTGATCACTGATTATTTCCCAGGATTTTCCACTAATAAGAAGAATGCATGTAGCATCTCCAGTGGTCAGAAAGATGTGGGAAAAAGATTGCCTGACTCTCTTCACAAAGGTAAAACTCCAAAAAGAAATGTAAGAAATGGGAAGCTTGGGAATGTTCCAGTCTGGAGTTGTATAACAGGGACACCATTTAGAGTGGATGCTTTTCGACATCTTAGAGGAGATTGTTTCCATTGGTTTCTTACTCACTTTCATATGGATCATTATCAAGGTCTGACAAAGTCATTTTGTCATGGAATGATTTATTGTTCTCCTATAACAGCAAAGCTAGTAAACATGAAGATTGGAATTCCATGGGAAAGGTTACAAGTTTTACCTCTCGACCAAAAAATTAACATTGCGGGAATAGATGTAACCTGTTTTGATGCTAATCATTGCCCTGGTTCAATAATCATACTCTTTGAACCACCCAATGGTAAGGCTGTTCTACATACAGGCGATTTCCGATTTTGTGAGCAAATGGGAAGCTTGTCGGTTTTTCAAACATGTCGCATCCATACTCTGATCCTTGATACCACCTATTGTGATCCACAGTATGATTTCCCAAAGCAGGAGACCGTTATACAATTTGTAATTGATGCCGTTCAGGCTGAAGCTTTCAACCCAAAAACTCTTTTCCTGATTGGATGTTATACCATCGGAAAGGAACGGCTTTTTTTGGAGGTTGCCCGTGTTCTGCGCAAGAAGGTGTATGTAACTGCAGCAAAGTTACGCATTTTGAAATGCTTGGGGTTCTCAGCGGAGGACATGCAGTGGTTTACAGTGAATGAACGGGAAAGCCACATACATGTTGTACCTCTGTGGACACTTGCGAGCTTTAAACGACTGAAGCATGTATCAAGTCAATATGCAAATCGATTCAGTCTTATAGTTGCTTTCTCGCCTACCGGCTGGGCTCTTTCAAAAGGAAAGAAGAAATCTCCGGGGAGAAGGTGGCAGCAAGGTACAATTATAAGGTATGAAGTGCCATATAGTGAGCATAGCAGCTTCTCAGAACTCCAGGATTTTGTAAAGATTGTATCTCCTGCAAACATAATACCAAGTGTGAATAATCATGGACCTGACTCAGCTCGTGCCATGATCTCCCTATTGTCATCTTGA 2319 43.51 MPLINAAAHRHHQPTASQSPQFHIPTNAADDDDDDFLPSTQTVLSSRSSTSQKPLSTSDLSLHIRAPKRPKRSAPMATVFGSSEIDLGCSLDLIQPSIVGCSYETHDANWGEEIFDGDDDFSGATDECKGSKVNGGYLCNSIESRLINSRVDCDVGVSGSDDFESDAELELLLNLHSQLDEEDRISGVGFHTEETDFPVDEEEGLIQCPLCGVDISDLSDEQRLVHTNDCIDKEDAQAQNGALTSDKKQTLGPQQSGDSSRFSTVLKWLHGVGLSKYEDIFVREEIDWDTLQWLTDEDLNNMGITALGPRRKITHALSELRKEFSAVETCTNSHAPSGTGQQSNIGSDGRERSINGTNKTPANKLITDYFPGFSTNKKNACNISSGKLITDYFPGFSTNKKNACSISSGQKDVGKRLPDSLHKGKTPKRNVRNGKLGNVPVWSCITGTPFRVDAFRHLRGDCFHWFLTHFHMDHYQGLTKSFCHGMIYCSPITAKLVNMKIGIPWERLQVLPLDQKINIAGIDVTCFDANHCPGSIIILFEPPNGKAVLHTGDFRFCEQMGSLSVFQTCRIHTLILDTTYCDPQYDFPKQETVIQFVIDAVQAEAFNPKTLFLIGCYTIGKERLFLEVARVLRKKVYVTAAKLRILKCLGFSAEDMQWFTVNERESHIHVVPLWTLASFKRLKHVSSQYANRFSLIVAFSPTGWALSKGKKKSPGRRWQQGTIIRYEVPYSEHSSFSELQDFVKIVSPANIIPSVNNHGPDSARAMISLLSS 772
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 84109246 84116041 + Hsped.01g19280.1 Hepe01g1928 561038

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Hepe01g1928 772 SMART SAM_4 257 323 IPR001660 GO:0005515(InterPro)
Hepe01g1928 772 SUPERFAMILY Metallo-hydrolase/oxidoreductase 461 755 IPR036866 -
Hepe01g1928 772 Pfam DNA repair metallo-beta-lactamase 655 758 IPR011084 -
Hepe01g1928 772 Pfam SAM domain (Sterile alpha motif) 260 321 IPR001660 GO:0005515(InterPro)
Hepe01g1928 772 MobiDBLite consensus disorder prediction 11 25 - -
Hepe01g1928 772 SUPERFAMILY SAM/Pointed domain 258 323 IPR013761 -
Hepe01g1928 772 CDD SNM1A-1C-like_MBL-fold 427 583 - -
Hepe01g1928 772 Gene3D - 256 334 IPR013761 -
Hepe01g1928 772 MobiDBLite consensus disorder prediction 330 360 - -
Hepe01g1928 772 MobiDBLite consensus disorder prediction 38 59 - -
Hepe01g1928 772 FunFam DNA ligase 6 445 604 - -
Hepe01g1928 772 CDD SAM_superfamily 265 319 - -
Hepe01g1928 772 FunFam DNA cross-link repair 1A protein 586 733 - -
Hepe01g1928 772 ProSiteProfiles SAM domain profile. 260 323 IPR001660 GO:0005515(InterPro)
Hepe01g1928 772 PANTHER DNA CROSS-LINK REPAIR PROTEIN PSO2/SNM1-RELATED 437 768 - GO:0003684(PANTHER)|GO:0006303(PANTHER)|GO:0035312(PANTHER)|GO:0036297(PANTHER)
Hepe01g1928 772 MobiDBLite consensus disorder prediction 1 60 - -
Hepe01g1928 772 Gene3D - 446 755 IPR036866 -
Hepe01g1928 772 Gene3D - 586 733 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe01g1928 K15340 - - csv:101218609 1257.66
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe01g1928 Hepe-Chr1:84109246 Hepe02g0931 Hepe-Chr2:11242134 7.53e-55 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g184 . Blo12g01034 . . . . . . . . . . Car09g00326 . . . . . . . . . . . Cla05g01642 Cam05g1752 Cec05g1761 Cco05g1817 Clacu05g1743 Cmu05g1628 Cre05g1755 Cone4ag1709 Cone7ag1626 . . Lsi04g01373 . . . . . . . . Bpe04g00105 . . . . Cmo09g00379 Cma09g00377 . . . . . Bhi09g03063 Tan01g3503 . . Hepe01g1928 Mch11g0465 . . . . . . . . . . . Cme07g00163
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008703 0 2 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 4 2 1 34