Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe01g1934 ATGGAATCGGAGGATTCAGTGACATTGAGATTGGAGGAATTGCTCAAAGAATTGGGGAAGAAACAGAGATTCGAGGAAGCAGTTTCCACCATTCTTTCTCTGCTTCGAGATCGCTATCCTACTGCTTCTCCTTCTCTACGCAAATCGTTCTATTCCGTAATTTGTCGAGTTGCGACAGTATTGAAGACGAGGTTTACAGCCCCAGGGTTTTGGCTTGTTGGTCTCAAGCTTTTTCAGTTTTCTTTGACGCTGCTCTCTGATCATTCTGAGAGACAACATTTACAGGCTTGCGTAACTCAAGCTAAGGAAATTCTGCACCAAATTGAAAATCCATCACCGCCTCCACTAACTACTTCATCAAATAGAGGCTATCTTTTTGAGGGCCATCTTACTGTTGATCCGGAGCCACCCCAGCCCCAATGGCTGGTGCAGTCGAACCTCTTGACAGCCGCTGCAGCTACGCTGTTTAATGCTGAATCTTCTCAAGGTCCGGCTGAGAACAACAACACTTCTGAGAATGCTAATGATATTCTTCAAGCGCTTTTTGAGAATCTAGATAATTCTGTAGATGGGTTCATGGATTTGGGAACGGTTAGCGGACCACGAAAAGTCCCTCCTGCAAGTAAAGAAGTCATCGCCAAACTTCCTGTAATTACTATAACAGAGGAAGTTCTTGCCAAGCTAGGAAGAGATGTACAATGTGCCATTTGCAGGGAAAACTTGGCTGTTGATGACAAGATGCAGGAATTGCCTTGCAAACACACATTCCACCCACCTTGTTTGAAGCCGTGGATGGATGAGCATAACTCTTGTCCGATATGTCGACATGAATTGCCCACGGACGACCATAAATATGAGAGCTGGAAGGAGCGAGAGAAAGAGGCTGAAGAAGAGAGAAAAGGAGCTGCAAATGCGGTTCGTGGTGGTGAATTTATGTATATTTGA 945 44.97 MESEDSVTLRLEELLKELGKKQRFEEAVSTILSLLRDRYPTASPSLRKSFYSVICRVATVLKTRFTAPGFWLVGLKLFQFSLTLLSDHSERQHLQACVTQAKEILHQIENPSPPPLTTSSNRGYLFEGHLTVDPEPPQPQWLVQSNLLTAAAATLFNAESSQGPAENNNTSENANDILQALFENLDNSVDGFMDLGTVSGPRKVPPASKEVIAKLPVITITEEVLAKLGRDVQCAICRENLAVDDKMQELPCKHTFHPPCLKPWMDEHNSCPICRHELPTDDHKYESWKEREKEAEEERKGAANAVRGGEFMYI 314
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 84158870 84161275 - Hsped.01g19340.1 Hepe01g1934 561044
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe01g1934 314 Coils Coil 285 305 - -
Hepe01g1934 314 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 115 280 - GO:0005737(PANTHER)|GO:0016567(PANTHER)|GO:0061630(PANTHER)
Hepe01g1934 314 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 197 281 IPR013083 -
Hepe01g1934 314 ProSiteProfiles Zinc finger RING-type profile. 234 275 IPR001841 -
Hepe01g1934 314 FunFam E3 ubiquitin-protein ligase RNF181 197 281 - -
Hepe01g1934 314 Pfam Ring finger domain 233 275 IPR001841 -
Hepe01g1934 314 CDD RING-H2_RNF126-like 233 275 - -
Hepe01g1934 314 SMART ring_2 234 274 IPR001841 -
Hepe01g1934 314 SUPERFAMILY RING/U-box 228 281 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe01g1934 Hepe-Chr1:84158870 Hepe07g2324 Hepe-Chr7:67573710 2.03e-23 dispersed
Hepe01g1934 Hepe-Chr1:84158870 Hepe03g1701 Hepe-Chr3:73887765 1.56e-14 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe01g1934 K16274 - csv:101218065 416.772