Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe01g1937 ATGGTCTGCGAGATGGAGACTGATGTTATAGAAGATATGGACATCGAAGCCCTTTCTTCTATGTGGCCTGAGGATGTTGGACCAGATGTTCGAAAACAGTTCAATGTAGAAAGGCCAGGAGCAGATCAAGATATGTTGAAAGAAGTTAACATAATCGAAGAACCGACAATTGTTGATTTCCAGAGACTGATAGAGTTAACTAACTATACTGAGAAAGGATCTTCTCAATTACAATATCTTGCAAAACAGTGGGAGTATAAGCAAGCAAATGCTGTGCGTCTCATTAAAGAAGAACTTGACATTCTAAGCAAGCAGAAGAAAGAAGTTGAGCTCAAGAAATTGAAGATATTAGAGGAACATCTTTTTGAGGAAGAAAGATATGCTGGTGATAAACGTCCAATTTCTATTTTGGAAGAATCTTGTGATCTATGGCAAGATATTCCAAGGAGAAAAACTGATCTCGTTGTTCAAAGTAAGAGAGTTGAAATTGATGCAGAGTATGATACAGTGACGTACTGGAAGCAGCGAGCCATGGATCTCGAAAAGTTCTTGGAAGCAAGTCTACAGCGAGAACAGATGCTCTCAGAGAAGCTTCAGGATAACATAAAAAATATTGAAAAGCAGTCCTCACCAGTTGAGGAATTGTCACAGATTCTGAAAAGAGCTGACAATTTTTTGCATTTTGTTCTGCAGAATGCACCAGTTGTTTTTGGTCATCAGGACAAAGAGTTGCGCTACCGATTTATCTACAATCATTTTCCTAGTTTGCAAGAAGAGGATATTATAGGAAGAACAGACGTCGAAATTTTTAGTGGTGCTGGTGTTAAGGAATCTCAAGATTTCAAGAAAGAAGTTCTGGAGAAAGGGTTGCCTGCAAAGAGGGAAATACAGTTTGATACAGAATTGTTTGGGCTGAAGACCTTTTTGATTTACGTTGAACCTGTCTTTAGCAAGGCTGGGGAGACAATTGGAATAAATTATATGGGAATGGACATAACTGATCAGGTAGTTAAAAAAAGAGAAAAGATGGCAAAGCTTCGTGAGGAGATAGCAGTACAAAAAGCCAAGGAATCAGAACTGAACAAAACAATTCATATTACGGAGGAGACAATGCGAGCAAAGCAAATGCTAGCAACCATGTCCCATGAAATTAGATCTCCACTGTCTGGAGTGGTTAGTATGGCTGAGATCCTGTCCACCACAAAACTTGACCGGGAACAACAACATCTGTTGGATGTTATGCTGTCTTCAGGAGACTTGGTTCTTCAACTTATAAACGATATCTTGGACCTGTCTAAAGTTGAATCAGGAGTAATGAAATTGGAAACTACAAAATTCCGTCCAAGAGAGGTTGTAAACCATATTCTGCAGACTGCTGCCGCATCATTGCGAAAATTCTTAGTTCTGGAGGGACGTATAGCAGATGATGTTCCTATAGAGGTCATTGGAGATGTTCTTAGGATTCGGCAAATCCTCACCAACTTGATCAGCAACGCAATCAAGTTCACTCATAAAGGGAAGGTTGGAATTAAACTTTATGTTTTACCCTATCCACCCATTATTGGCAAAGGAGAAGAATGCCATAAGAAATCAACGGCTGATAACTCAACAGTTCCAGTAAATGGTTTGCAAGAAGGAACATGTCATCCAGCCCCTCAGAATGGCTTTTGTGGCCAAAAACAAGGTGACAGAAATCATTTGCATTGTGATGGACCAGGAACTCCAAACAAGAGTGAAGCCACAATGAATGGAAATAGAGAAAACAAATCTTGTTCGCCCGAAACGACGGTATGGATACGCTGCGATGTATACGATACAGGAATTGGAATACCAGAAAATGCATTACCAACCCTTTTTAAGAGGTACATGCAAGCTAGTGCCGATCATGCTCGAAAATATGGAGGGACTGGACTTGGACTAGCAATATGCAAACAACTGGTTGAATTGATGGGTGGTCATCTCACCGTTACCAGCCGAGAGAACCATGGCTCTACATTTACATTTGTATTGCCATACAAGGTTTCAACCACCAGCAGTCCTTCCGAAGATTCCGATGAGCTCTCAGACGACGAGTCCACAAATGACGAAATGACTGAGGGCTTTTTCCAATTCCAACCCCACAGTTTCAGTTCACTATCCTCTTCTAATGGATCCACAAGGATCCCAAACTCATTGTTACATACATCTGGCTATCCCAGCTCAACCAAACTCAATGGATTTGCTGAAGCTTCTTATCCTTTTCCCTCGAACAACATCACACCACAAGAGACTGCTTCTCTTAGAGATGCCAGTTCAGCCGATGCCACATTAACCTCAAGTGAATCACAATGTTCATCAAGTCAGATCAACTCAAATCTCGATAACGAGAAATCAACTCATGGAGGAAACCGAAATGTCGGTGTGAATTCCCTTCACAGATCAGAAACAACGAAGCAGGAAGATACATTGGAAAAGCCAAGTAATAAACTTCAAAAAACAGATCAGGGGAAAGAGAGATCCGATGCAAGTTCCCACTTTAGAACTAGCAGTAGTGGATCAGAAGTAACAATGGCATTGGAACCCAGAATTCTTCTTGTTGAGGACAATAAGACTAATATTATGGTGGCTCAGTCCATGATGAAGAAGTTCGGCCAAAAACTCGATGTAGTAACCAACGGAATTGAAGCTGTTCGTGCAGTTCAACAACGTTCTTACGATCTCATTCTCATGGATGTATTCATGCCATTTATGGACGGGCTTGAAGCAACAAGGTTAATCCGTTCATATGAGGAAACAGGGAGCTGGGAGGCAGCTGTAAATGCTGGAGTAGAGCAAACTACACCTTGTCGGACTCCGCCTTCCTCCTCCCGCAACAGGATGCCCATCATTGCTATGACGGCGAATGCATTGTCAGAAAGCGCAGATGAGTGTTATGAAAATGGTATGGATTCGTTCGTATCAAAGCCAATCACCTTCCAAAAGTTAAAACAATGTCTTGATCAATATTTACCACAACCACGACCCTTGTAA 3009 41.31 MVCEMETDVIEDMDIEALSSMWPEDVGPDVRKQFNVERPGADQDMLKEVNIIEEPTIVDFQRLIELTNYTEKGSSQLQYLAKQWEYKQANAVRLIKEELDILSKQKKEVELKKLKILEEHLFEEERYAGDKRPISILEESCDLWQDIPRRKTDLVVQSKRVEIDAEYDTVTYWKQRAMDLEKFLEASLQREQMLSEKLQDNIKNIEKQSSPVEELSQILKRADNFLHFVLQNAPVVFGHQDKELRYRFIYNHFPSLQEEDIIGRTDVEIFSGAGVKESQDFKKEVLEKGLPAKREIQFDTELFGLKTFLIYVEPVFSKAGETIGINYMGMDITDQVVKKREKMAKLREEIAVQKAKESELNKTIHITEETMRAKQMLATMSHEIRSPLSGVVSMAEILSTTKLDREQQHLLDVMLSSGDLVLQLINDILDLSKVESGVMKLETTKFRPREVVNHILQTAAASLRKFLVLEGRIADDVPIEVIGDVLRIRQILTNLISNAIKFTHKGKVGIKLYVLPYPPIIGKGEECHKKSTADNSTVPVNGLQEGTCHPAPQNGFCGQKQGDRNHLHCDGPGTPNKSEATMNGNRENKSCSPETTVWIRCDVYDTGIGIPENALPTLFKRYMQASADHARKYGGTGLGLAICKQLVELMGGHLTVTSRENHGSTFTFVLPYKVSTTSSPSEDSDELSDDESTNDEMTEGFFQFQPHSFSSLSSSNGSTRIPNSLLHTSGYPSSTKLNGFAEASYPFPSNNITPQETASLRDASSADATLTSSESQCSSSQINSNLDNEKSTHGGNRNVGVNSLHRSETTKQEDTLEKPSNKLQKTDQGKERSDASSHFRTSSSGSEVTMALEPRILLVEDNKTNIMVAQSMMKKFGQKLDVVTNGIEAVRAVQQRSYDLILMDVFMPFMDGLEATRLIRSYEETGSWEAAVNAGVEQTTPCRTPPSSSRNRMPIIAMTANALSESADECYENGMDSFVSKPITFQKLKQCLDQYLPQPRPL 1002
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 84207514 84215146 + Hsped.01g19370.1 Hepe01g1937 561047

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Hepe01g1937 1002 Gene3D - 436 679 IPR036890 -
Hepe01g1937 1002 Pfam His Kinase A (phospho-acceptor) domain 374 437 IPR003661 GO:0000155(InterPro)|GO:0007165(InterPro)
Hepe01g1937 1002 Coils Coil 336 363 - -
Hepe01g1937 1002 FunFam Histidine kinase 5 848 997 - -
Hepe01g1937 1002 PRINTS Bacterial sensor protein C-terminal signature 599 613 IPR004358 GO:0016310(InterPro)|GO:0016772(InterPro)
Hepe01g1937 1002 PRINTS Bacterial sensor protein C-terminal signature 658 671 IPR004358 GO:0016310(InterPro)|GO:0016772(InterPro)
Hepe01g1937 1002 PRINTS Bacterial sensor protein C-terminal signature 634 652 IPR004358 GO:0016310(InterPro)|GO:0016772(InterPro)
Hepe01g1937 1002 ProSiteProfiles Histidine kinase domain profile. 379 674 IPR005467 -
Hepe01g1937 1002 MobiDBLite consensus disorder prediction 807 837 - -
Hepe01g1937 1002 MobiDBLite consensus disorder prediction 751 806 - -
Hepe01g1937 1002 SMART HisKA_10 372 437 IPR003661 GO:0000155(InterPro)|GO:0007165(InterPro)
Hepe01g1937 1002 Gene3D - 850 996 - -
Hepe01g1937 1002 ProSiteProfiles Response regulatory domain profile. 855 996 IPR001789 GO:0000160(InterPro)
Hepe01g1937 1002 Coils Coil 188 208 - -
Hepe01g1937 1002 SUPERFAMILY CheY-like 854 997 IPR011006 -
Hepe01g1937 1002 CDD REC_hyHK_CKI1_RcsC-like 856 992 - -
Hepe01g1937 1002 Gene3D - 335 435 - -
Hepe01g1937 1002 PANTHER TWO-COMPONENT HISTIDINE PROTEIN KINASE 34 997 - GO:0000155(PANTHER)|GO:0005887(PANTHER)|GO:0009927(PANTHER)|GO:0046777(PANTHER)
Hepe01g1937 1002 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 372 437 IPR036097 GO:0000155(InterPro)|GO:0007165(InterPro)
Hepe01g1937 1002 SMART HKATPase_4 483 674 IPR003594 -
Hepe01g1937 1002 SMART REC_2 854 992 IPR001789 GO:0000160(InterPro)
Hepe01g1937 1002 CDD HisKA 371 433 IPR003661 GO:0000155(InterPro)|GO:0007165(InterPro)
Hepe01g1937 1002 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 441 672 IPR036890 -
Hepe01g1937 1002 MobiDBLite consensus disorder prediction 751 847 - -
Hepe01g1937 1002 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 597 672 IPR003594 -
Hepe01g1937 1002 Gene3D PAS domain 205 334 - -
Hepe01g1937 1002 Pfam Response regulator receiver domain 856 923 IPR001789 GO:0000160(InterPro)
Hepe01g1937 1002 Coils Coil 92 119 - -
Hepe01g1937 1002 FunFam Histidine kinase 5 213 349 - -
Hepe01g1937 1002 CDD HATPase_EvgS-ArcB-TorS-like 488 671 - -
Hepe01g1937 1002 FunFam Putative histidine kinase 5 360 437 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe01g1937 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe01g1937 Hepe-Chr1:84207514 Hepe03g1107 Hepe-Chr3:63614763 9.31e-41 dispersed
Hepe01g1937 Hepe-Chr1:84207514 Hepe08g0395 Hepe-Chr8:3532040 5.33e-47 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Hepe06g0917 . 5 1197 Histidine Kinase Gene Family AT2G17820 65.5 0.0e+00 1455.7
Hepe01g0254 . 21 1006 Histidine Kinase Gene Family AT2G01830 71.8 0.0e+00 1343.9
Hepe02g2600 . 24 984 Histidine Kinase Gene Family AT2G01830 72.1 0.0e+00 1326.6
Hepe02g0293 . 279 1229 Histidine Kinase Gene Family AT2G01830 54.3 2.6e-276 948.7
Hepe03g1107 . 59 1008 Histidine Kinase Gene Family AT2G01830 53.0 3.2e-274 941.8
Hepe08g0395 . 304 1262 Histidine Kinase Gene Family AT2G01830 52.5 4.3e-271 931.4
Hepe01g1937 . 1 996 Histidine Kinase Gene Family AT5G10720 58.3 2.2e-295 1011.9
Hepe08g1559 . 1 1119 Histidine Kinase Gene Family AT1G09570 79.7 0.0e+00 1818.5
Hepe08g1551 . 19 1160 Histidine Kinase Gene Family AT1G09570 70.8 0.0e+00 1615.9
Hepe02g0311 . 18 1110 Histidine Kinase Gene Family AT1G09570 54.4 0.0e+00 1206.4
Hepe05g1374 . 45 1130 Histidine Kinase Gene Family AT1G09570 54.3 0.0e+00 1187.6
Hepe05g1374 . 41 1071 Histidine Kinase Gene Family AT2G18790 79.3 0.0e+00 1657.1
Hepe07g1806 . 24 1046 Histidine Kinase Gene Family AT2G18790 59.7 0.0e+00 1219.1
Hepe02g0311 . 26 1067 Histidine Kinase Gene Family AT2G18790 52.8 0.0e+00 1077.4
Hepe08g1559 . 21 1054 Histidine Kinase Gene Family AT2G18790 52.3 5.4e-312 1067.4
Hepe08g1551 . 45 1094 Histidine Kinase Gene Family AT2G18790 50.3 5.6e-301 1030.8
Hepe02g0311 . 12 1114 Histidine Kinase Gene Family AT5G35840 61.2 0.0e+00 1362.8
Hepe05g1374 . 45 1132 Histidine Kinase Gene Family AT5G35840 52.1 0.0e+00 1137.5
Hepe08g1559 . 9 1113 Histidine Kinase Gene Family AT5G35840 51.8 0.0e+00 1114.0
Hepe05g1374 . 41 1132 Histidine Kinase Gene Family AT4G16250 76.5 0.0e+00 1699.5
Hepe07g1806 . 36 1108 Histidine Kinase Gene Family AT4G16250 57.7 0.0e+00 1255.7
Hepe02g0311 . 26 1113 Histidine Kinase Gene Family AT4G16250 53.0 0.0e+00 1114.8
Hepe08g1559 . 8 1114 Histidine Kinase Gene Family AT4G16250 51.8 0.0e+00 1113.2
Hepe07g1806 . 36 1124 Histidine Kinase Gene Family AT4G18130 62.6 0.0e+00 1346.6
Hepe05g1374 . 49 1141 Histidine Kinase Gene Family AT4G18130 58.3 0.0e+00 1263.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005508 1 2 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 4 2 1 40
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
54877 PF02518 HATPase_c 6.60E-28 CL0025 Hepe TR