Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe01g1939 ATGGGCTATCTGAATTCAGTTTTATCTTGCTCTAGCCAGATTCATGCTGCTGAGGAGGCACCTGTAAGCGGCGGGGGATTAAGTCAGAATGGAAAGTTCAGCTACGGATATGCTAGCTCTCCAGGGAAGAGATCTTCGATGGAGGATTTTTATGAGACGCGAATAGATGGCGTGGAAGGAGAAATAGTTGGTCTATTTGGTGTTTTCGATGGTCATGGTGGAGCACGAGCTGCGGAATATGTTAAGCACAATCTTTTTAGTAATTTGATCAGTCATCCAAAGTTCATATCAGATACCAAATCCGCTATATCTGATGCTTACAACCACACAGACGCAGAATTTCTAAAGTCGGAAAATAATCAAAACAGAGATGCTGGATCAACTGCTTCCACTGCCATCCTAGTTGGTGACCGCTTACTTGTTGCAAATGTGGGCGATTCTAGAGCTGTTATTTGCCGGGGTGGCATTGCCATTGCTGTCTCTCGAGATCATAAGCCTGACCAAACTGATGAGCGACGAAGAATTGAGGATGCAGGAGGATTTGTGATGTGGGCTGGAACTTGGAGAGTTGGAGGTGTTCTTGCTGTTTCACGTGCATTTGGTGATAGGTTGTTAAAGCAATATGTTGTTGCTGACCCTGAAATTCAGGAGGAAAAAATTGATAGCTCGCTCGAGTTTCTTATACTTGCAAGTGATGGACTGTGGGATGTCGTCACTAATGAGGAAGCCGTTGCTATGATTAAACCAATTCAGGAACCAGAAGAGGCGGCGAAGAGGTTGATGCAAGAAGCATATCAGAGAGGTAGTGCAGATAACATTACTTGCGTCGTTGTCCGTTTCTTGGCGCATCAAGAAAGTCCCTCTCGTGGAACTTCTGGGTAA 882 45.01 MGYLNSVLSCSSQIHAAEEAPVSGGGLSQNGKFSYGYASSPGKRSSMEDFYETRIDGVEGEIVGLFGVFDGHGGARAAEYVKHNLFSNLISHPKFISDTKSAISDAYNHTDAEFLKSENNQNRDAGSTASTAILVGDRLLVANVGDSRAVICRGGIAIAVSRDHKPDQTDERRRIEDAGGFVMWAGTWRVGGVLAVSRAFGDRLLKQYVVADPEIQEEKIDSSLEFLILASDGLWDVVTNEEAVAMIKPIQEPEEAAKRLMQEAYQRGSADNITCVVVRFLAHQESPSRGTSG 293
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 84250824 84255296 - Hsped.01g19390.1 Hepe01g1939 561049
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe01g1939 293 PANTHER PROTEIN PHOSPHATASE 30 279 IPR015655 GO:0004722(InterPro)|GO:0004722(PANTHER)|GO:0006470(InterPro)|GO:0035970(PANTHER)
Hepe01g1939 293 Pfam Protein phosphatase 2C 63 273 IPR001932 -
Hepe01g1939 293 CDD PP2Cc 33 280 IPR001932 -
Hepe01g1939 293 SMART PP2C_4 24 278 IPR001932 -
Hepe01g1939 293 SMART PP2C_SIG_2 45 280 IPR001932 -
Hepe01g1939 293 FunFam probable protein phosphatase 2C 59 26 284 - -
Hepe01g1939 293 SUPERFAMILY PP2C-like 28 280 IPR036457 -
Hepe01g1939 293 Gene3D - 26 287 IPR036457 -
Hepe01g1939 293 ProSitePatterns PPM-type phosphatase domain signature. 65 73 IPR000222 GO:0043169(InterPro)
Hepe01g1939 293 ProSiteProfiles PPM-type phosphatase domain profile. 34 280 IPR001932 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe01g1939 Hepe-Chr1:84250824 Hepe02g2750 Hepe-Chr2:76016297 1.73e-120 dispersed
Hepe01g1939 Hepe-Chr1:84250824 Hepe02g0124 Hepe-Chr2:1422576 5.91e-62 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe01g1939 K17506 - csv:101216117 564.303