Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe01g1942 ATGGCGGCTCTTTCTTCAATGCTTTTCTTTGCTTTTTGCTTCCTTTTCTTTCACTCTTTCGCCGGAAAAGTCTCGCCGGTCGCCCACCAACTGACTGTCGAACTCGCCGACCTTTTTCCGTCCGCTGCCTGCAGCCGCCGCCCCGCCGATGCCCATACGTCAGGTTTGGGAAGGCAGTCATGGGCATCGCTGGAGGTGATTCACAGGCACGGGCCGTGCGCCGGCGGAGGTTCAAAAGCTCCGACGGAGGCGGAAATATTCCTTGGAGATAAGGGTCGAGTGGATTTCATTCACTCAAAATTCTCAGGGGAGTTCAAAGGAATTGATCAATTACGGGCGTCGAAGGCGACAAAAATTCCGGCGAAGTCCGGCGCCACCATAGGGTCCGGGAACTACATAGTGAACGTGGCACTGGGGTCACCAAAGAAATACCTGTCGCTAATATTTGACACGGGGAGCGATCTGACGTGGACACAGTGCCAGCCATGCGCGAGATATTGCTACAGCCAAAAGGATCCTGTTTTCGCTCCTTCCCAATCCACCACTTATTCCAACATCACTTGTTCTTCTACTCAATGCTCTCAGCTTGAATCTGGCACCGGGAACCAGCCCGGTTGCTCTGCCGCGAAATCGTGCATTTATGGAATACAATACGGCGATCAATCTTTCTCCGTCGGATATTTCGCCAAAGAAACCCTAACCTTAACCTCCAACGACGTCATCAACAATTTCCTCTTCGGTTGCGGCCAAAACAACCGTGGTCTCTTCGGCAGCGCCGCCGGTCTCATCGGCCTCGGCCAGGACCAAATCTCCATCGTCAAACAGACCGCTCAAAAGTACGGCCAGATCTTCTCCTACTGCCTCCCTAAATCCTCCAGTTCCACCGGCTACCTAACCTTCGGCGGAGGCAGCGGCGGCGGATCTCTGAAATACACGCCGATCACAAAAGCACACGGCGTCGCGAATTTCTACGGCCTCGACATCGTCGGAATGAAAGTCGGCGGAACTCAGATTCCGATTTCACCGTCGGTCTTCTCGACCTCCGGCGCAATCATCGATTCCGGCACGGTGATCACTCGGCTACCGCCGGACGCATACAGCGCCTTGAAATCAGCGTTTCAGAAAGGAATGGCGGCGTATCCGAAGGCGCCGGAGCTTTCGATTCTCGACACGTGTTACGATCTGAGCAAATATAGCACCGTGGAGATCCCGAAAGTGTCGATTCTTTTCAAAGGAGGAACGGAACTGGATCTGGACGGCACCGGAATCTTGTACGGAGCATCGACGACGCAGGTCTGTTTGGCGTTCGCCGGAAATCAAGATCCAAGCTCCATCGCCATTATCGGAAACGTGCAGCAGAAAACTCTGCAAGTTGTTTACGATGTCGGTGGAGAGAAAATTGGGTTTGGTTATAATGGTTGTTAG 1425 53.4 MAALSSMLFFAFCFLFFHSFAGKVSPVAHQLTVELADLFPSAACSRRPADAHTSGLGRQSWASLEVIHRHGPCAGGGSKAPTEAEIFLGDKGRVDFIHSKFSGEFKGIDQLRASKATKIPAKSGATIGSGNYIVNVALGSPKKYLSLIFDTGSDLTWTQCQPCARYCYSQKDPVFAPSQSTTYSNITCSSTQCSQLESGTGNQPGCSAAKSCIYGIQYGDQSFSVGYFAKETLTLTSNDVINNFLFGCGQNNRGLFGSAAGLIGLGQDQISIVKQTAQKYGQIFSYCLPKSSSSTGYLTFGGGSGGGSLKYTPITKAHGVANFYGLDIVGMKVGGTQIPISPSVFSTSGAIIDSGTVITRLPPDAYSALKSAFQKGMAAYPKAPELSILDTCYDLSKYSTVEIPKVSILFKGGTELDLDGTGILYGASTTQVCLAFAGNQDPSSIAIIGNVQQKTLQVVYDVGGEKIGFGYNGC 474
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 84272425 84277342 - Hsped.01g19420.1 Hepe01g1942 561052

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Hepe01g1942 474 ProSiteProfiles Peptidase family A1 domain profile. 132 470 IPR033121 -
Hepe01g1942 474 Pfam Xylanase inhibitor C-terminal 324 469 IPR032799 -
Hepe01g1942 474 FunFam Aspartyl protease AED1 109 301 - -
Hepe01g1942 474 Pfam Xylanase inhibitor N-terminal 132 302 IPR032861 -
Hepe01g1942 474 ProSitePatterns Eukaryotic and viral aspartyl proteases active site. 147 158 IPR001969 GO:0004190(InterPro)|GO:0006508(InterPro)
Hepe01g1942 474 SUPERFAMILY Acid proteases 126 474 IPR021109 -
Hepe01g1942 474 PANTHER ASPARTYL PROTEASES 45 474 IPR001461 GO:0004190(InterPro)|GO:0006508(InterPro)
Hepe01g1942 474 FunFam Aspartyl protease AED1 304 474 - -
Hepe01g1942 474 CDD cnd41_like 131 474 IPR033873 -
Hepe01g1942 474 Gene3D Acid Proteases 306 474 IPR021109 -
Hepe01g1942 474 PRINTS Pepsin (A1) aspartic protease family signature 350 361 IPR001461 GO:0004190(InterPro)|GO:0006508(InterPro)
Hepe01g1942 474 PRINTS Pepsin (A1) aspartic protease family signature 446 461 IPR001461 GO:0004190(InterPro)|GO:0006508(InterPro)
Hepe01g1942 474 PRINTS Pepsin (A1) aspartic protease family signature 138 158 IPR001461 GO:0004190(InterPro)|GO:0006508(InterPro)
Hepe01g1942 474 Gene3D Acid Proteases 108 301 IPR021109 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe01g1942 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe01g1942 Hepe-Chr1:84272425 Hepe02g2198 Hepe-Chr2:61427566 5.23e-42 dispersed
Hepe01g1942 Hepe-Chr1:84272425 Hepe03g1681 Hepe-Chr3:73638827 5.65e-92 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g614 . . . Bda03g00113 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bpe04g00099 . . Sed05g1816 . . . . . . . . Bhi09g03045 Tan01g3527 Cmetu07g1748 . Hepe01g1942 Mch11g0478 . . . . . . . . . . . Cme07g00147
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005907 2 1 0 1 2 1 1 1 1 1 1 1 1 1 1 1 1 4 1 1 1 1 1 0 1 1 1 2 2 2 36