Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe01g1954 ATGCAGGCAGATCAGACGGCGATAAGTTTGAGACCAGGTGGTGGTGGTGGCTTTCGTGGCAGTAGATTTGCTAATCCTCGCTTCGATTCCTCCTCCGCCGATTCTTCCTCGCTTCGTCCTCATGGCGGCGTTGCGTCAATCCTCAAGACTGGAGATCTACGCTTTGAAGGTCGGGAGCGAATCCAGTACACTCGGGACCAGCTTCTGCAACATAGGGAGGTTGCTACAGCCTCTGAGGATATCTTGAAGGTCAAACTAGAAGTTGAGACTGAGATTGTTGGGGAGGATCAAGCATGGGCTCGTGCCGAAAGCAATCAGTCACAATCACAATCACAATCTCAAGTCCGTTACTTTGAGCCAGACAATCGAGATTGGCGTGGTCGATCCGGACAGTTACCTGCCTCTGCGGAGGAAGCATCTTGGGAGGCAAGTCGCGGGAATAAGGATTTATCAGGACAATCTGACTCGTGGTTTCAAGACTCAAATAATAGGACCCAAGTTTCTGGTAACCAAGGGGTCGGTACTGTACCTGCTGCCCTTATCAAGGCCGAAGTTCCTTGGTCAGTTAGAAGAGGTAATATCTCAGAAAAGGAACGTGTTTTGAAGACAGTAAAAGGTATACTCAATAAATTGACTCCAGAAAAGTTTGACTTACTCAAGGGTCAACTGATTGATTCTGGAATTGATTCCGCTGATATTTTGAAGGATGTTATATCGCTTATATTTGAGAAGGCCGTTTACGAGCCCACATTTTGCCAAATGTATGCACTTTTGTGCTCTGACCTTAATCAGAAGCTTACTACATTTGAATCGGATGTGCCTGGAGAGAAAGATATCACTTTTAAGCGAGTTCTCTTAAATATTTGCCAAGAGGCATTTGAAGGTTCCGATAACCTGAGGACAGAAATCAGGCAGATGACTAATCCTGAGCATGCAACGGAGAGAAGAGATAAAGAAAGAATGGTTAAGCTTCGAACTCTAGGAAACATTCGCCTGATAGGTGAGCTTCTTAAACAGAAGATGGTGCCTGAAAAGATTGTTCACCATATTGTTCTGGAGCTGTTGGGGTCCGACGACAAAGCATGCCCTGCTGAGGAGGAGAATGTTGAGGCTATTTGTCACTTCTTTAACACAATTGGTAAGCAGCTGGATGAGAGCCCAAAATCTCGGCGGGTCAATGATGGATATTTCAGCCGGTTGAAGGAGCTCACTGCAAACACCCAACTAGCACCTAGGTTAAGATTTATGGTCCGTGATGTTCTTGATTTACGGGCCAATAAATGGGTTCCTAGGCGTGAAGAGGTGAAAGCGAAAACCATCACTGAAATTCATTCAGAGGCTGAGAAGAATCTAGGGCTTCGTCCAGGTTCAATGGCAATGATGAGAAATGGCCGTAATGCCGAGGCACCTGGTGGTTTTCCCGTTGCCCGACCTGGCTTTGGGATGATGCCTGGAATGCCTGGAGCTGGAGCCAGGAAAATGCCTGGTATGCCTGGACTTGATTCGGACAATTGGGAGGTTCCTAAATCCCGATCAAGGGGCGAAAGCGGAGGTCATACTCAGGCTTCTGCCCGTGTCCAGACACCATTAACTGGCAAAACACCTTCCATTAATTCCAAATATCTACCTCAGGGAAGTGGTGGCGTAATAACTGGGAAAACAAGTGCCTTGCTACAGGGTAGTGCTGCATCTCCTGCCCGACCGACTTCTGTCCCTGGAACCCAGCCGGTAGCTCACAACCCTAAACCAGTTGCTCCTGTTGCATCAGCCATATCCTCTCCTCAGAAGCCAACAGCTCCTGCATCCAAATCTGATGATCTTCAGAAGAAAACTGTTTCGCTGCTCGAGGAATACTTCAGTGTACGGATTCTCGATGAAGCTCTACAGTGTGTAGAGGAGCTGAAATCCCCAGCTTATCACCCTGAGTTTGTTAAAGAATCTCTTAACATGGCACTTGAAAAGATTCCACCATGTGTGGACCCAGTTGTTAAGCTTCTTGAGCACTTGCTTCAAAAGAATGTCTTGACTGCAAAGGATATAGGTTCCGGGTGCCTGGAATATGGGTCAATGATGGATGATATCGGCATTGATCTACCAAAAGCGCCAAACAATTTCGGTGAGATTCTCGGGAAGTTGATTTTGGTTGGGGGACTGGATTTCACGGTCGTGGAGGAGATTCTTAAGAAGTTGGAAGACAACTATTTCCAGAAAGCCATTTTTGGTGGTGCTATGAAGAGCCTCAACTCTAGCCCTTCTGGAGAAGGAATTCTGGCAACTCAAAGTGTTGAAATCCAGGCATGTGAGAATTTACTTGCGTGA 2319 46.83 MQADQTAISLRPGGGGGFRGSRFANPRFDSSSADSSSLRPHGGVASILKTGDLRFEGRERIQYTRDQLLQHREVATASEDILKVKLEVETEIVGEDQAWARAESNQSQSQSQSQVRYFEPDNRDWRGRSGQLPASAEEASWEASRGNKDLSGQSDSWFQDSNNRTQVSGNQGVGTVPAALIKAEVPWSVRRGNISEKERVLKTVKGILNKLTPEKFDLLKGQLIDSGIDSADILKDVISLIFEKAVYEPTFCQMYALLCSDLNQKLTTFESDVPGEKDITFKRVLLNICQEAFEGSDNLRTEIRQMTNPEHATERRDKERMVKLRTLGNIRLIGELLKQKMVPEKIVHHIVLELLGSDDKACPAEEENVEAICHFFNTIGKQLDESPKSRRVNDGYFSRLKELTANTQLAPRLRFMVRDVLDLRANKWVPRREEVKAKTITEIHSEAEKNLGLRPGSMAMMRNGRNAEAPGGFPVARPGFGMMPGMPGAGARKMPGMPGLDSDNWEVPKSRSRGESGGHTQASARVQTPLTGKTPSINSKYLPQGSGGVITGKTSALLQGSAASPARPTSVPGTQPVAHNPKPVAPVASAISSPQKPTAPASKSDDLQKKTVSLLEEYFSVRILDEALQCVEELKSPAYHPEFVKESLNMALEKIPPCVDPVVKLLEHLLQKNVLTAKDIGSGCLEYGSMMDDIGIDLPKAPNNFGEILGKLILVGGLDFTVVEEILKKLEDNYFQKAIFGGAMKSLNSSPSGEGILATQSVEIQACENLLA 772
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 84366032 84372640 + Hsped.01g19540.1 Hepe01g1954 561064
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe01g1954 772 MobiDBLite consensus disorder prediction 146 171 - -
Hepe01g1954 772 MobiDBLite consensus disorder prediction 100 171 - -
Hepe01g1954 772 MobiDBLite consensus disorder prediction 558 606 - -
Hepe01g1954 772 Pfam MA3 domain 607 719 IPR003891 -
Hepe01g1954 772 SMART ma3_7 607 719 IPR003891 -
Hepe01g1954 772 MobiDBLite consensus disorder prediction 514 545 - -
Hepe01g1954 772 MobiDBLite consensus disorder prediction 1 43 - -
Hepe01g1954 772 SUPERFAMILY ARM repeat 600 758 IPR016024 -
Hepe01g1954 772 FunFam Eukaryotic translation initiation factor isoform 4G-2 192 428 - -
Hepe01g1954 772 Pfam MIF4G domain 201 427 IPR003890 GO:0003723(InterPro)|GO:0005515(InterPro)
Hepe01g1954 772 MobiDBLite consensus disorder prediction 487 545 - -
Hepe01g1954 772 Gene3D - 600 761 - -
Hepe01g1954 772 ProSiteProfiles MI domain profile. 606 728 IPR003891 -
Hepe01g1954 772 MobiDBLite consensus disorder prediction 558 576 - -
Hepe01g1954 772 Gene3D - 201 440 - -
Hepe01g1954 772 MobiDBLite consensus disorder prediction 100 118 - -
Hepe01g1954 772 SUPERFAMILY ARM repeat 194 430 IPR016024 -
Hepe01g1954 772 MobiDBLite consensus disorder prediction 25 39 - -
Hepe01g1954 772 SMART if4_15 201 427 IPR003890 GO:0003723(InterPro)|GO:0005515(InterPro)
Hepe01g1954 772 MobiDBLite consensus disorder prediction 591 606 - -
Hepe01g1954 772 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4 GAMMA 50 769 IPR045208 GO:0003729(PANTHER)|GO:0003743(PANTHER)|GO:0003743(InterPro)|GO:0016281(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe01g1954 Hepe-Chr1:84366032 Hepe09g0563 Hepe-Chr9:5301871 1.25e-250 dispersed
Hepe01g1954 Hepe-Chr1:84366032 Hepe05g1800 Hepe-Chr5:68256718 2.51e-53 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe01g1954 K03260 - csv:101211356 1207.59