Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe01g1955 ATGGGTATTTACCTCAGCAATCCTAAAACTGAGAAGTCATCTGAAGATGGTCAGAATCGACGGCTTAGATATGGACTATCATCCATGCAAGGATGGCGTGCCACAATGGAAGATGCTCATGCTGCAATTCCTGATCTGGATGCTTGCACTTCCTTCTTTGGTGTTTATGATGGTCATGGAGGTAAGGTGGTTGCAAAGTTCTGTGCCAAGTTCCTACATGAGCAAGTGAAGAAAAATGAAGCTTATGCAGCTGGAGATATAGGAACCTCTGTGCAGAAAGCATACTTAAGAATGGATGAAATGATGCGTGGACAAAGAGGTTGGAGAGAATTAGCTGTTTTGGGTGATAGATTGAACAAGTTCACTGGCATGATAGAAGGGTTAATCTGGTCACCAAGAAGCAGTGATGCAAATGACCAGGCTGATGATTGGGCCTTTGAGGAGGGTCCGCACTCTGACTTTACTGGCCCAACTTCAGGGTGTACAGCTTGTGTTGCAATTATTAGAAATAACAAACTTGTTGTTGCAAATGCTGGTGATTCTCGGTGTGTGATATCAAGAAAGGGCCAGGCTCACAGTCTCTCTAGAGATCACAAGCCTGATCTTGAAGCTGAGAAGGACAGAATTCTGAAAGCTGGTGGTTTTATTCATGCTGGACGAGTCAATGGTAGCTTGAACCTTGCCAGAGCTATTGGTGACATGGAATTTAAGCAGAATAAATTTTTACCTGTTGAAAAGCAAGTTATCACTGCAAATCCTGATGTAACTACTGTTGAGCTTTGCGATGACGACGAGTTTATTGTGATAGCCTGTGATGGGATATGGGATTGCATGTCTAACCAGCATCTGGTAGATTTTATACATGACCAACTAGAATCAGAAAGTAAACTCTCTGTGGTTGTTGAGAGAGTACTTGATAGGTGTTTGGCACCTTCCACAGCTGGTGGCGAGGGATGTGATAACATGACCATGATTTTGGTGCAACTTAAGAAAGATATTCAATCTGTCGATGAGCAAACTTCGCCCGCTGCTGCTACCGACCAGATAGTACCGGAACAAAACCAAGAGATGAATTGA 1077 43.36 MGIYLSNPKTEKSSEDGQNRRLRYGLSSMQGWRATMEDAHAAIPDLDACTSFFGVYDGHGGKVVAKFCAKFLHEQVKKNEAYAAGDIGTSVQKAYLRMDEMMRGQRGWRELAVLGDRLNKFTGMIEGLIWSPRSSDANDQADDWAFEEGPHSDFTGPTSGCTACVAIIRNNKLVVANAGDSRCVISRKGQAHSLSRDHKPDLEAEKDRILKAGGFIHAGRVNGSLNLARAIGDMEFKQNKFLPVEKQVITANPDVTTVELCDDDEFIVIACDGIWDCMSNQHLVDFIHDQLESESKLSVVVERVLDRCLAPSTAGGEGCDNMTMILVQLKKDIQSVDEQTSPAAATDQIVPEQNQEMN 358
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 84375311 84383596 + Hsped.01g19550.1 Hepe01g1955 561065
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe01g1955 358 ProSitePatterns PPM-type phosphatase domain signature. 52 60 IPR000222 GO:0043169(InterPro)
Hepe01g1955 358 SUPERFAMILY PP2C-like 3 330 IPR036457 -
Hepe01g1955 358 CDD PP2Cc 23 329 IPR001932 -
Hepe01g1955 358 Pfam Protein phosphatase 2C 136 313 IPR001932 -
Hepe01g1955 358 Pfam Protein phosphatase 2C 23 104 IPR001932 -
Hepe01g1955 358 MobiDBLite consensus disorder prediction 337 358 - -
Hepe01g1955 358 Gene3D - 1 330 IPR036457 -
Hepe01g1955 358 ProSiteProfiles PPM-type phosphatase domain profile. 23 329 IPR001932 -
Hepe01g1955 358 PANTHER PROTEIN PHOSPHATASE 2C 18 330 IPR015655 GO:0004722(InterPro)|GO:0006470(PANTHER)|GO:0006470(InterPro)
Hepe01g1955 358 SMART PP2C_4 13 327 IPR001932 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe01g1955 Hepe-Chr1:84375311 Hepe01g2353 Hepe-Chr1:88046733 1.70e-38 dispersed
Hepe01g1955 Hepe-Chr1:84375311 Hepe03g1669 Hepe-Chr3:73536757 3.12e-159 wgd
Hepe01g1955 Hepe-Chr1:84375311 Hepe08g2470 Hepe-Chr8:65762522 4.30e-35 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe01g1955 K17499 - csv:101211604 640.188