Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe01g1966 ATGTCGGACGAGGAGCACCACTTCGAATCCAAGGCCGACGCCGGAGCCTCTAAGACCTACCCGCAACAGGCCGGAACCATCCGGAAGAACGGTTACATCGTCATTAAGAACCGTCCATGCAAGGTGGTTGAGGTTTCAACTTCTAAGACAGGCAAGCATGGGCATGCTAAGTGTCACTTTGTGGGAATCGACATCTTCACTAACAAGAAGCTCGAAGATATTGTTCCATCATCCCACAATTCTGATGTGCCTCATGTTAATCGTACTGATTATCAGCTCATTGATATCTCTGAGGATGGATTTGTGAGTCTTTTAACTGACAATGGTAACACCAAGGATGATATGAGGCTTCCAACCGATGACAGTCTGCTCACTCAGATTAAAGAAGGGTTTGCTGATGGAAAGGACCTTGTCGTGTCGGTGATGTCTGCCATGGGAGAGGAACAAATTTGTGCCCTGAAGGATATCGGCCCGAAGAATTAG 483 47.41 MSDEEHHFESKADAGASKTYPQQAGTIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHFVGIDIFTNKKLEDIVPSSHNSDVPHVNRTDYQLIDISEDGFVSLLTDNGNTKDDMRLPTDDSLLTQIKEGFADGKDLVVSVMSAMGEEQICALKDIGPKN 160
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 84438221 84440000 - Hsped.01g19660.1 Hepe01g1966 561076
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe01g1966 160 Gene3D - 1 85 IPR014722 -
Hepe01g1966 160 FunFam Eukaryotic translation initiation factor 5A 1 85 - -
Hepe01g1966 160 ProSitePatterns Eukaryotic initiation factor 5A hypusine signature. 50 57 IPR019769 GO:0003723(InterPro)|GO:0003746(InterPro)|GO:0043022(InterPro)|GO:0045901(InterPro)|GO:0045905(InterPro)
Hepe01g1966 160 PANTHER TRANSLATION INITIATION FACTOR 5A FAMILY MEMBER 1 157 IPR001884 GO:0003723(InterPro)|GO:0003746(PANTHER)|GO:0003746(InterPro)|GO:0006414(PANTHER)|GO:0043022(InterPro)|GO:0045901(InterPro)
Hepe01g1966 160 Pfam Eukaryotic elongation factor 5A hypusine, DNA-binding OB fold 85 154 IPR020189 GO:0003723(InterPro)|GO:0003746(InterPro)|GO:0043022(InterPro)|GO:0045901(InterPro)|GO:0045905(InterPro)
Hepe01g1966 160 Pfam Translation initiation factor 5A-like, N-terminal 17 79 IPR048670 -
Hepe01g1966 160 SUPERFAMILY Nucleic acid-binding proteins 86 156 IPR012340 -
Hepe01g1966 160 SMART eIF_5a_2 85 154 IPR020189 GO:0003723(InterPro)|GO:0003746(InterPro)|GO:0043022(InterPro)|GO:0045901(InterPro)|GO:0045905(InterPro)
Hepe01g1966 160 MobiDBLite consensus disorder prediction 1 22 - -
Hepe01g1966 160 FunFam Eukaryotic translation initiation factor 5A 86 158 - -
Hepe01g1966 160 SUPERFAMILY Translation proteins SH3-like domain 15 93 IPR008991 -
Hepe01g1966 160 NCBIfam translation initiation factor IF-5A 17 153 IPR001884 GO:0003723(InterPro)|GO:0003746(InterPro)|GO:0043022(InterPro)|GO:0045901(InterPro)
Hepe01g1966 160 PIRSF Transl_init_eIF5A 1 157 IPR001884 GO:0003723(InterPro)|GO:0003746(InterPro)|GO:0043022(InterPro)|GO:0045901(InterPro)
Hepe01g1966 160 Gene3D - 86 159 IPR012340 -
Hepe01g1966 160 CDD S1_eIF5A 86 156 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe01g1966 Hepe-Chr1:84438221 Hepe06g0753 Hepe-Chr6:53944036 5.89e-15 dispersed
Hepe09g0578 Hepe-Chr9:5386366 Hepe01g1966 Hepe-Chr1:84438221 7.06e-106 transposed
Hepe10g1776 Hepe-Chr10:54525037 Hepe01g1966 Hepe-Chr1:84438221 3.36e-106 transposed
Hepe01g1966 Hepe-Chr1:84438221 Hepe10g0217 Hepe-Chr10:2191766 2.65e-101 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe01g1966 K03263 - mdm:103416502 311.997