Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe01g1969 ATGGATATTTTCTTGGACCTTAATGTGGATCCTACTTCTTGTTATGCTAATAATTCAGCCATGGATGAAGCTCTTCATTCTTCACAGAAAAGAGAGTTTGAAGCTGGAGAAATCTATTGGGATAAACAAAAACTCTCCCTAAGCTTGGCAAATAAGAAGCAGGGCGGAAGTGATTCGAGGCCGAGATTGGAAGAAGAGTTGGATAGAAAAATCGAAGAGAACGGGAAGCTAAGTCAGATGTTGAGAGTAATGTATGAGAAATACATGAATCTTCAGAAGCAAGTGATGTATTTGGTGAGCCAACAAAAGGAGAATTCAGAAATAGAAGCAGCTGTTTCAAGGAAGAGAAAGGCAGAAGGAGATGAAGATCATCAAGAGTATGAGAATTTGGAAGGGATTTGCAGCACAAGGGATGAAGATTTCAACAGGTGGCTTAAGAGGCCAAGACTAAATGGAAACTCAAAGGTTTCTAAGGTTTTTGTTCAGAAAGATGCATCAGATCCAAGCTTGGTAGTGAAAGATGGGTATCAATGGAGGAAGTATGGGCAAAAAGTGACAAGAGACAACCCTTCTCCAAGAGCTTACTTCAAGTGCTCCTCTGCACCAAATTGTCCTGTCAAAAAGAAGGTGCAAAGAAGTTTGGAAGATCCAACAATTTTGGTGGCCACTTACGAGGGAGAACACAGCCATGCCAGCCATTTTCAAACTGAGCTATCTTTAAGGTCCATCAATGGTGGCAAAGGCAGTGCAGTCCCGGTCTTAGCCACCATCAAGCCGTCATGCGCCACCGTGACCCTCGATTTGATTCACGAAGACGGCCTGTTTAAGAGTCCGAAAGATTACGGATCCTCGGAATCGGCCGCGTCGACGGAGGCCGCCGTTTGGCAGGAGTTTTTGGTACAACAAATGGCCTCCTCTTTGAAGAAGGATCCTGAATTTGCTGGCATTGTTGCTGGTGCCATTTCAGGCAAGGTTTTGGGAAACCAAACCCTAAACCCTAAACCCTAA 1008 44.15 MDIFLDLNVDPTSCYANNSAMDEALHSSQKREFEAGEIYWDKQKLSLSLANKKQGGSDSRPRLEEELDRKIEENGKLSQMLRVMYEKYMNLQKQVMYLVSQQKENSEIEAAVSRKRKAEGDEDHQEYENLEGICSTRDEDFNRWLKRPRLNGNSKVSKVFVQKDASDPSLVVKDGYQWRKYGQKVTRDNPSPRAYFKCSSAPNCPVKKKVQRSLEDPTILVATYEGEHSHASHFQTELSLRSINGGKGSAVPVLATIKPSCATVTLDLIHEDGLFKSPKDYGSSESAASTEAAVWQEFLVQQMASSLKKDPEFAGIVAGAISGKVLGNQTLNPKP 335
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 84469385 84472157 - Hsped.01g19690.1 Hepe01g1969 561079

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Hepe01g1969 335 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 44 325 IPR044810 GO:0003700(InterPro)
Hepe01g1969 335 ProSiteProfiles WRKY domain profile. 167 233 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Hepe01g1969 335 SMART WRKY_cls 172 232 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Hepe01g1969 335 SUPERFAMILY WRKY DNA-binding domain 170 231 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Hepe01g1969 335 Gene3D WRKY domain 155 232 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Hepe01g1969 335 Pfam WRKY DNA -binding domain 173 230 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe01g1969 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe01g1969 Hepe-Chr1:84469385 Hepe09g0135 Hepe-Chr9:1069494 1.26e-21 dispersed
Hepe01g1969 Hepe-Chr1:84469385 Hepe10g0218 Hepe-Chr10:2209337 5.92e-45 wgd
Hepe01g1969 Hepe-Chr1:84469385 Hepe02g1294 Hepe-Chr2:16263377 8.40e-60 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g507 . . . . . . . . . . . . . . Sed11g1143 . . Bhi04g00046 Tan02g2760 Cmetu03g1247 . Hepe10g0218 . Lcy13g1831 . . . . . . . . . . . . . . . . . . . . . . . Sed05g1739 . . . . . . . . Bhi09g03003 Tan01g3569 . . Hepe01g1969 Mch11g0506 . . . . . . . . . . . Cme07g00117
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005027 2 3 1 2 3 1 2 1 1 1 1 1 2 1 1 2 1 0 2 1 1 1 1 1 1 1 1 3 2 0 41
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
54878 PF03106 WRKY 2.30E-23 CL0274 Hepe TF