Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe01g1970 ATGGACGAAGAACAGATAGCGAATTTCGTCTCAGCGTACTTGAAGAAGAAGGGTTTCAAGGATACGGAACATGCTTTCCAGGAGGAGCTTCGTCACACCAAGACTATCTCTTCTTCTTCCATTGATCTCGACTTCGCTAAGCACTTACTCTCCTTCACCGAAGCAGAGAATATTCCAGCCAAATACCTTGAAGGATATAGCAAGCTTAGGTCCTGGGCTTACAACTCACTAGATTTGTATAAGCATGAGTTGCTTCGTGTGCTATATCCTGTGTTTATCCATTGTTTCATGGATCTCGTGGCTAAAGGACATATTCAAGAAGCTCGAACCTTTTTCAATAGGTTCCGTGAAGACCATGAAATGATGCACCTACGAGATCTACAAAAATTGGAAGGTGTACTATCTCCCTCTCATTTGGAGGAGATGGAATTTGCTCATTCTCTTAGGCAGAGCAAAGTCAACATAAAAATATGCCAGTACTCCTATGAGATGCTACTTCAATATCTCCATAAGACCCAAACCACAGTAATACTCGGGATTATCAATGAACGTATCAACTTCCAAGTTTTCCCTGGTCAGCCTAGCTCAATATCTGATGATGTTGAACTTGTGACACTCACGGGAACCACCCAGGATACTGCCAATCAGATAAATAAAAAAGAAGTCCAATGGGGGTTACTTGAAGATTCTTTAGAAGAACGCTTGGAGAAAGCTGGTGGTTTGCTTTCAGATTCTGAAAAGGCTGAGGGAGAAACCAAGGATGGTGATGTAGATGAGAATAAGAAAAGAACAACCGAGGGAGGAAAGCAAGGTGCTTCAATTAAAAAGGTCAAGAAGGACAAGGCTGCCGGTGCAACTGGGAAAACTCTGAGGGCTGAAGCTAATTCTGCATCTATGGCACCACGAGTGAAGTCAGAACTTGCTTTACCCATAATTTCAACTGAGGTGGAACAATCTATTCTTGAAGACTTGAGAAACCGTGTGCAGTTGAGTTCTGTTGCTCTGCCATCAGTCAGCTTTTATACCTTCATTAATACACACAACGGTTTAAACTGTTCTTCAATATCACACGATGGAGCTTTAGTTGCTGGTGGATTTTCAGACTCTTCTTTGAAGGTATGGGACATGGCAAAGCTGGGACAACAAGCTGGCAATACTGTTTTGCAGGATGAAAACGACATGTCTACTAGTGATCAAATGACAGGGCATACAAGTGGGAAGAAGTCTTATACATTATTTCAAGGTCATTCTGGGCCTGTTCACTCTGCCACTTTCAGTCCCATTGGGGACTATGTTCTTTCCTCCTCTGCAGACACAACTATTCGATTGTGGAGCACAAAACTAAATGCCAATCTTGTTTGCTACAAAGGTCACAATTACCCAGTATGGGATGTTCAGTTTAGTCCGGTTGGACATTATTTTGCTAGTTGCTCACATGATCGAACTGCAAGGATCTGGTCTATGGACAGGATTCAACCTCTAAGGATCATGGCAGGACATCTATCTGATGTGGATTGTGTTCAATGGCATGCCAACTGCAACTACATCGCAACTGGCTCAAGTGACAAAACTGTTAGAATGTGGGATGTCCAGAGTGGGGAATGTGTTCGAATTTTCATTGGTCACAGGAGCATGATTCTGTCGTTGGCAATGTCACCTGATGGTCGGTTCATGGCATCTGGAGATGAAGACGGTACGATTATGATGTGGGACCTATCTACTGGTCGCTGTGTTACACCTTTGATTGGTCACACATCATGTGTTTGGACCCTTGCTTTCAGCTGTGAGGGCTCTCTCCTTGCCTCTGGCTCTGCCGATTGCACAGTGAAATTATGGGACGTAACTTCAAGCACAAAGGCACAAAAAACAGATGAAACCAAAAGTGGATCTGCCAATAGGCTTAGATCCTTGAAAACTCTACCAACCAAGTCGACTCCGGTTTATAGTTTGCGGTTCTCTCGGAGGAATCTCTTATTTGCAGCTGGAGCTCTCTCCAAAAGTGCATCAACTGCTTGA 2016 43.55 MDEEQIANFVSAYLKKKGFKDTEHAFQEELRHTKTISSSSIDLDFAKHLLSFTEAENIPAKYLEGYSKLRSWAYNSLDLYKHELLRVLYPVFIHCFMDLVAKGHIQEARTFFNRFREDHEMMHLRDLQKLEGVLSPSHLEEMEFAHSLRQSKVNIKICQYSYEMLLQYLHKTQTTVILGIINERINFQVFPGQPSSISDDVELVTLTGTTQDTANQINKKEVQWGLLEDSLEERLEKAGGLLSDSEKAEGETKDGDVDENKKRTTEGGKQGASIKKVKKDKAAGATGKTLRAEANSASMAPRVKSELALPIISTEVEQSILEDLRNRVQLSSVALPSVSFYTFINTHNGLNCSSISHDGALVAGGFSDSSLKVWDMAKLGQQAGNTVLQDENDMSTSDQMTGHTSGKKSYTLFQGHSGPVHSATFSPIGDYVLSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFSPVGHYFASCSHDRTARIWSMDRIQPLRIMAGHLSDVDCVQWHANCNYIATGSSDKTVRMWDVQSGECVRIFIGHRSMILSLAMSPDGRFMASGDEDGTIMMWDLSTGRCVTPLIGHTSCVWTLAFSCEGSLLASGSADCTVKLWDVTSSTKAQKTDETKSGSANRLRSLKTLPTKSTPVYSLRFSRRNLLFAAGALSKSASTA 671
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 84497880 84506255 + Hsped.01g19700.1 Hepe01g1970 561080

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Hepe01g1970 671 PANTHER TRANSCRIPTION INITIATION FACTOR TFIID 2 664 - GO:0005669(PANTHER)|GO:0006367(PANTHER)|GO:0016251(PANTHER)
Hepe01g1970 671 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 413 445 - -
Hepe01g1970 671 MobiDBLite consensus disorder prediction 239 299 - -
Hepe01g1970 671 ProSitePatterns Trp-Asp (WD) repeats signature. 558 572 IPR019775 -
Hepe01g1970 671 ProSiteProfiles Trp-Asp (WD) repeats profile. 539 580 IPR001680 GO:0005515(InterPro)
Hepe01g1970 671 FunFam Transcription initiation factor TFIID subunit 5 491 661 - -
Hepe01g1970 671 Pfam WD domain, G-beta repeat 533 571 IPR001680 GO:0005515(InterPro)
Hepe01g1970 671 Pfam WD domain, G-beta repeat 575 613 IPR001680 GO:0005515(InterPro)
Hepe01g1970 671 Pfam WD domain, G-beta repeat 454 487 IPR001680 GO:0005515(InterPro)
Hepe01g1970 671 Pfam WD domain, G-beta repeat 410 445 IPR001680 GO:0005515(InterPro)
Hepe01g1970 671 Pfam WD domain, G-beta repeat 492 529 IPR001680 GO:0005515(InterPro)
Hepe01g1970 671 Pfam WD domain, G-beta repeat 344 375 IPR001680 GO:0005515(InterPro)
Hepe01g1970 671 CDD TAF5_NTD2 59 191 IPR007582 -
Hepe01g1970 671 ProSiteProfiles Trp-Asp (WD) repeats profile. 581 622 IPR001680 GO:0005515(InterPro)
Hepe01g1970 671 ProSiteProfiles LIS1 homology (LisH) motif profile. 2 34 IPR006594 GO:0005515(InterPro)
Hepe01g1970 671 ProSiteProfiles Trp-Asp (WD) repeats profile. 455 496 IPR001680 GO:0005515(InterPro)
Hepe01g1970 671 Gene3D - 211 492 IPR015943 GO:0005515(InterPro)
Hepe01g1970 671 Gene3D - 493 573 IPR015943 GO:0005515(InterPro)
Hepe01g1970 671 PRINTS G protein beta WD-40 repeat signature 600 614 IPR020472 -
Hepe01g1970 671 PRINTS G protein beta WD-40 repeat signature 516 530 IPR020472 -
Hepe01g1970 671 PRINTS G protein beta WD-40 repeat signature 432 446 IPR020472 -
Hepe01g1970 671 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 455 489 - -
Hepe01g1970 671 ProSitePatterns Trp-Asp (WD) repeats signature. 600 614 IPR019775 -
Hepe01g1970 671 Gene3D - 574 668 IPR015943 GO:0005515(InterPro)
Hepe01g1970 671 SMART WD40_4 574 613 IPR001680 GO:0005515(InterPro)
Hepe01g1970 671 SMART WD40_4 532 571 IPR001680 GO:0005515(InterPro)
Hepe01g1970 671 SMART WD40_4 336 375 IPR001680 GO:0005515(InterPro)
Hepe01g1970 671 SMART WD40_4 405 445 IPR001680 GO:0005515(InterPro)
Hepe01g1970 671 SMART WD40_4 490 529 IPR001680 GO:0005515(InterPro)
Hepe01g1970 671 SMART WD40_4 448 487 IPR001680 GO:0005515(InterPro)
Hepe01g1970 671 SUPERFAMILY WD40 repeat-like 337 665 IPR036322 GO:0005515(InterPro)
Hepe01g1970 671 SMART Lish 2 34 IPR006594 GO:0005515(InterPro)
Hepe01g1970 671 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 581 616 - -
Hepe01g1970 671 MobiDBLite consensus disorder prediction 239 286 - -
Hepe01g1970 671 ProSitePatterns Trp-Asp (WD) repeats signature. 516 530 IPR019775 -
Hepe01g1970 671 Gene3D TFIID subunit TAF5, NTD2 domain 42 190 IPR037264 -
Hepe01g1970 671 CDD WD40 413 663 - -
Hepe01g1970 671 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 539 576 - -
Hepe01g1970 671 ProSitePatterns Trp-Asp (WD) repeats signature. 362 376 IPR019775 -
Hepe01g1970 671 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 497 534 - -
Hepe01g1970 671 Pfam WD40 associated region in TFIID subunit, NTD2 domain 58 185 IPR007582 -
Hepe01g1970 671 ProSiteProfiles Trp-Asp (WD) repeats profile. 413 445 IPR001680 GO:0005515(InterPro)
Hepe01g1970 671 SUPERFAMILY Taf5 N-terminal domain-like 48 190 IPR037264 -
Hepe01g1970 671 ProSiteProfiles Trp-Asp (WD) repeats profile. 497 538 IPR001680 GO:0005515(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe01g1970 K03130 - - csv:101214018 1262.28
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g509 . . Bda01g00765 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Sed02g0871 . . . . . . . . Bhi09g03000 Tan01g3572 Cmetu07g0650 . Hepe01g1970 Mch11g0508 . . . . . . . . . . . Cme07g00115
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010521 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 32