Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe01g1979 ATGACGGTTGAGCCTAGAAGCGATGACCCAAATGACCAATTTCCGGCTGGAATGCGTGTTCTCGCTGTTGACGACGATCCCACTTGTCTTTTGATCTTGGAGACTTTGCTTCGTCGATGCCAGTATCATGTCACTACAACAAACCAGGCTGTTATGGCACTCAAGTTGTTGAGAGAAAACAAGAACATGTTCGACGTGGTTATCAGTGATGTCCACATGCCTGACATGGATGGATTTAAGCTGCTAGAGCTTGTTGGGCTGGAGATGGACCTTCCTGTTATTATGCTCTCTGCAAATGGAGATCCCAAACTTGTGATGAAAGGAATTTCTCATGGAGCATGCGATTACTTGCTGAAACCTGTTCGCATTGAGGAGTTAAAGAACATTTGGCAGCATGTAATCAGGAGAAAGAAATTTGATCCGAGGGACCGAATGAATTCGGGCAGTCAGGACAAGCCTGATTCTGAGAATGGTGAAGAAGAAGAAGCAGATCCAAATGGGAAATTTAATAAAAAAAGGAAGGATCAGGACTACAATGAAGATGATGACCAGGACTATAATGAGCAAGAGAATGATGACTCATCATCCCAGAAGAAGCCTCGTGTTGTTTGGTCTGTGGAGCTGCATAGGAAGTTTGTAAATGCTGTTAACCAGTTGGGCATAGACAAGGCAGTGCCTAAAAAGATTTTGGACTTGATGAACGTTGAAAAGCTCACAAGAGAAAATGTAGCTAGCCATCTCCAGAAATACAGGCTTTATCTCAAGAGAATCAGCTGTGTAGCAAACCAGCAAGCTAACATGGTGACTGCATTGAGCAGCGCAGATCCTTCCTATTTGAGAATTGGTTCTCTTGGCGGAATTGGGAGTTTTCATTCTTTGACTGGACCTCCACAGTTTCCTAACACTTCCTATAGATCTATCCCAACCACCGGGATGCTTGGTCGATTGAATACTCCTGCTTGTATGGGTATGCATGGCCTTTCTTCCCCTGGAACAGTTCAACTGGGTAATTTGAACAATTCAAGCAATGATCAGCCTGCATTTCAGCCAATTATGCTTTCTGGAAACCGCAGTGGGAATATTTTCCGGGGAATGCCCGAGCCATCAGAACTTGATCAACTACAACATGTTAAGCATGGGACCCATGTGGACAATATCTCCCCTGCTTTTGATGAAAGAACAGTATTTCCTGCTTCCATTGGCCTCCCAACTGCAAACATGTCTTCCAGTACTTTGATTAATCCTTTTTTAGGATTAACTAATAATCCCTTGATTTCAGAAGTCCAGCATCATGAAATGCATGGTGGTAGAAAATTTGGACCTCAATCTTCCATTTCGGTTGTATCTTCAAATTCAGAAAGCTCACGTCCTTCACTCGATAATGTTAGATGCACTGGTGACAATTGGTCGAAAGCTGCACCTTCATCAAGGATCTACATGAATACTATTCCATCTAGCAACCTTTCTAATATTGCTACTTCCTATCACAGTCAGTTGAGAGACAATACTACCAGTGCATTGCATATAGGAAATTGTCTTTCTGACGTTTCTTCTATTACTTCAATATCTACCCAGTCCCCTGATTTGAGAACAGATTCTCAACGTCAAGCAGCCACAACTAGCAATAGATATGATCAAATAATCACAAAGGTTCCTGTTCAAGATTGGAATGATCATAAACAGGACGCCTATTACCACACGACTGTGGCCTGTAGGTCATCAAATTCTTTGATACCAGTGAATGGTGCCGCAGAGACGTTACCCAAGCATTTGGAAAATCAGAACCCAATCTTCTCTGGTAGAAAGGATTTTAATGTGACCAGTCAAGGAAAGGTTCTTGATCATGCAATGGTGGAACATGTTCAATTCAAGAAACCAGCTATGGAGACATCACTCATGTTGAGACAAGGGTACTTGTATGATCATCAGCAAAAGATGCAATCTAGCTTTTCTTCGAGTAACTGCGGCTCCTTGGAAGACATAGCATGTGCAATGATGAAACAGGAACAAGATGATGGAAAATTATTGGAAGGAGACTTTGGATGTGATAATTATCCCATCGGAACGTGCATGTGA 2076 42.39 MTVEPRSDDPNDQFPAGMRVLAVDDDPTCLLILETLLRRCQYHVTTTNQAVMALKLLRENKNMFDVVISDVHMPDMDGFKLLELVGLEMDLPVIMLSANGDPKLVMKGISHGACDYLLKPVRIEELKNIWQHVIRRKKFDPRDRMNSGSQDKPDSENGEEEEADPNGKFNKKRKDQDYNEDDDQDYNEQENDDSSSQKKPRVVWSVELHRKFVNAVNQLGIDKAVPKKILDLMNVEKLTRENVASHLQKYRLYLKRISCVANQQANMVTALSSADPSYLRIGSLGGIGSFHSLTGPPQFPNTSYRSIPTTGMLGRLNTPACMGMHGLSSPGTVQLGNLNNSSNDQPAFQPIMLSGNRSGNIFRGMPEPSELDQLQHVKHGTHVDNISPAFDERTVFPASIGLPTANMSSSTLINPFLGLTNNPLISEVQHHEMHGGRKFGPQSSISVVSSNSESSRPSLDNVRCTGDNWSKAAPSSRIYMNTIPSSNLSNIATSYHSQLRDNTTSALHIGNCLSDVSSITSISTQSPDLRTDSQRQAATTSNRYDQIITKVPVQDWNDHKQDAYYHTTVACRSSNSLIPVNGAAETLPKHLENQNPIFSGRKDFNVTSQGKVLDHAMVEHVQFKKPAMETSLMLRQGYLYDHQQKMQSSFSSSNCGSLEDIACAMMKQEQDDGKLLEGDFGCDNYPIGTCM 691
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 84601864 84607837 - Hsped.01g19790.1 Hepe01g1979 561089
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe01g1979 691 MobiDBLite consensus disorder prediction 141 200 - -
Hepe01g1979 691 PIRSF RR_ARR_type-B 1 691 IPR017053 GO:0003677(InterPro)|GO:0003700(InterPro)|GO:0009736(InterPro)
Hepe01g1979 691 ProSiteProfiles Response regulatory domain profile. 19 134 IPR001789 GO:0000160(InterPro)
Hepe01g1979 691 SUPERFAMILY CheY-like 17 141 IPR011006 -
Hepe01g1979 691 FunFam Two-component response regulator 195 258 - -
Hepe01g1979 691 Gene3D - 17 152 - -
Hepe01g1979 691 PANTHER TWO-COMPONENT RESPONSE REGULATOR 14 375 IPR045279 GO:0009736(InterPro)
Hepe01g1979 691 Gene3D - 195 258 - -
Hepe01g1979 691 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 196 255 IPR017930 -
Hepe01g1979 691 NCBIfam myb-like DNA-binding domain, SHAQKYF class 199 252 IPR006447 GO:0003677(InterPro)
Hepe01g1979 691 SMART REC_2 18 130 IPR001789 GO:0000160(InterPro)
Hepe01g1979 691 CDD REC_typeB_ARR-like 20 134 - -
Hepe01g1979 691 Pfam Myb-like DNA-binding domain 201 251 IPR001005 -
Hepe01g1979 691 Pfam Response regulator receiver domain 20 128 IPR001789 GO:0000160(InterPro)
Hepe01g1979 691 MobiDBLite consensus disorder prediction 433 463 - -
Hepe01g1979 691 MobiDBLite consensus disorder prediction 442 463 - -
Hepe01g1979 691 SUPERFAMILY Homeodomain-like 197 256 IPR009057 -
Hepe01g1979 691 MobiDBLite consensus disorder prediction 162 180 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe01g1979 Hepe-Chr1:84601864 Hepe09g0595 Hepe-Chr9:5591848 2.27e-141 dispersed
Hepe03g0683 Hepe-Chr3:16361774 Hepe01g1979 Hepe-Chr1:84601864 7.31e-26 transposed
Hepe01g1979 Hepe-Chr1:84601864 Hepe08g2484 Hepe-Chr8:66136653 5.03e-117 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
54880 PF00072 Response_reg 3.80E-23 CL0304 Hepe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe01g1979 K14491 - csv:101215220 1209.9