Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe01g1984 ATGGCTAGGCCTCAAAAGCGATATCGTGGCGTAAGACAAAGGCATTGGGGCTCTTGGGTCTCCGAAATTCGTCATCCTTTGTTGAAGACGAGAATTTGGTTGGGGACATTCGAAACCGCGGAGGATGCAGCAAGGGCTTATGATGAAGCTGCAAGATTAATGTGTAATTTTCCGTACGATTCAAATGCAATTCACTCCTCGAATTCTAAGATTTTGTCGGCCAATTTGACTGCCAAATTGCATAGATGTTATATGGCTTCTCTGCAGATTAATAATCAAGCTTCACGGGAGTTTAAAAGACAAATTCCGCCGCCGGTTTATGCCGGTGCGGCGAGCTCGGTGGTGGAGGAGATTAGACCGCCGGCGGCGGAGCAAGCGCCGTGTGCGGCGGATTGGATGGTGAGAAGTGAATTTGGAGAACGGAAATTGTTGGAAGATGATCACATTGAGCAAATGATTGACGAGCTTCTTTATTATGGATCCATGGAGTTTTGTTTGTGA 501 46.71 MARPQKRYRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARLMCNFPYDSNAIHSSNSKILSANLTAKLHRCYMASLQINNQASREFKRQIPPPVYAGAASSVVEEIRPPAAEQAPCAADWMVRSEFGERKLLEDDHIEQMIDELLYYGSMEFCL 166
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 84647565 84648425 - Hsped.01g19840.1 Hepe01g1984 561094
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe01g1984 166 Gene3D AP2/ERF domain 6 62 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Hepe01g1984 166 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 4 126 IPR050913 -
Hepe01g1984 166 SMART rav1_2 7 64 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Hepe01g1984 166 Pfam AP2 domain 7 55 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Hepe01g1984 166 FunFam Ethylene-responsive transcription factor 2 6 63 - -
Hepe01g1984 166 PRINTS Ethylene responsive element binding protein signature 8 19 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Hepe01g1984 166 PRINTS Ethylene responsive element binding protein signature 30 46 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Hepe01g1984 166 CDD AP2 6 60 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Hepe01g1984 166 ProSiteProfiles AP2/ERF domain profile. 7 51 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Hepe01g1984 166 SUPERFAMILY DNA-binding domain 7 57 IPR016177 GO:0003677(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe01g1984 Hepe-Chr1:84647565 Hepe10g0227 Hepe-Chr10:2410480 4.57e-59 dispersed
Hepe01g1984 Hepe-Chr1:84647565 Hepe10g0226 Hepe-Chr10:2400040 1.40e-61 wgd
Hepe01g1984 Hepe-Chr1:84647565 Hepe02g1311 Hepe-Chr2:16630495 7.50e-48 wgd
Hepe01g1984 Hepe-Chr1:84647565 Hepe03g1656 Hepe-Chr3:73419690 3.47e-44 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
54882 PF00847 AP2 1.10E-11 CL0081 Hepe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe01g1984 - - - 0.0