Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe01g1989 ATGGCGTATCACAATCACCTCTCCCAGGACCTTCCTCTCCACCACTTTTCTGACCATCAACCTCTCTCCGACAACTCCCTCCGTACTATTTTGCCCGACCAGCTCGCCGGCGGTGCCCACTCTTCGCCGGACCCCAAATCCCACCATCATCACCACCACCATCCACTCCAGACTGCGCCCAATTGGCTCAACAACGCTCTTCTCCGCAGTCAAAACCCTCATTCTCACTACTCTACCGACACCGCCGCCGCTAATCAGAATTTCCTCAACCTTCACACCACCGCTTCCGATTCCACCGTCTCTCACTCTTCCAACCAATGGCTCTCCCGTCCGATCCTCCATCGAAACCACAGCGATGTAATTGACGACGTCGCCGCTGCCGGCGACGCCATGATCGGTGCTGCGACCGCCGCGCTCTCTCACGATTCCGGAGATTTGAAGAACGATGCCAATAGCGGAGATGGATTGAACAAGAGTGAGGGTATGGTGATGGAACCTGGCGGCGCCGGTGGAGGAGGAGAGGGGGTTTTGAATTGGCAACATGCTCGTTTTAAAGCGGAGATTCTTACTCATCCGCTTTATGAACAGCTTCTTTCAGCTCACGTTGCTTGTCTTCGAATCGCAACGCCGGTCGATCAATTGCCGAGAATCGACGCTCAGCTCGCTCAGTCGCAGAATGTCGTCGCCAAATACTCCGCCTTGAGCCACACCGCTCCGCCCATGGTCGGCGATGACAAAGAACTCGATCAGTTCATGACGCATTATGTTCTTCTGCTTTGTTCATTCAAAGAACAACTCCAACAACATGTTCGAGTCCATGCAATGGAAGCAGTGATGGCTTGCTGGGACATTGAGCAGTCCCTACAAAGCTTAACAGGAGTTTCGCCCGGTGAAGGTACAGGAGCAACAATGTCGGACGACGACGACGACCAGGTCGACAGTGATGCAAATATGTTTGAGGGGAGTTTAGAGGGTGCAGACACTATGGGATTTGGCCCTCTTATTCCCACAGAGAGTGAGAGGTCCTTGATGGAGAGGGTCAGGCAAGAACTGAAGCATGAATTAAAATCGGGTTACAAGGAGAAAATTGTGGATATAAGGGAAGAAATTCTGAGAAAGAGGAGAGCTGGAAAACTCCCTGGTGACACCACCTCTGTCTTAAAACAATGGTGGCAATCACATTCAAAGTGGCCTTATCCTACAGAGGAAGACAAGGCAAGGTTAGTGCAAGAAACTGGTCTGCAACTGAAACAGATAAACAATTGGTTCATTAACCAGAGAAAGCGAAACTGGCACAGCAATCCTTCAAGTTCTACAAACTTGAAAAGCAAACGCAAAAGCATTGGAGGTATATTCATTTTAATAGCTTGCAAAACGAACATAGTTACCGCTTTGACCGAAGAAGTTACTGATGGAAAACGGAACGGGGACGAGGACGAGGACGGAGAAATATATGCTGTGTGGCGTGGCGGGCAAGCGTAA 1482 50.54 MAYHNHLSQDLPLHHFSDHQPLSDNSLRTILPDQLAGGAHSSPDPKSHHHHHHHPLQTAPNWLNNALLRSQNPHSHYSTDTAAANQNFLNLHTTASDSTVSHSSNQWLSRPILHRNHSDVIDDVAAAGDAMIGAATAALSHDSGDLKNDANSGDGLNKSEGMVMEPGGAGGGGEGVLNWQHARFKAEILTHPLYEQLLSAHVACLRIATPVDQLPRIDAQLAQSQNVVAKYSALSHTAPPMVGDDKELDQFMTHYVLLLCSFKEQLQQHVRVHAMEAVMACWDIEQSLQSLTGVSPGEGTGATMSDDDDDQVDSDANMFEGSLEGADTMGFGPLIPTESERSLMERVRQELKHELKSGYKEKIVDIREEILRKRRAGKLPGDTTSVLKQWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHSNPSSSTNLKSKRKSIGGIFILIACKTNIVTALTEEVTDGKRNGDEDEDGEIYAVWRGGQA 493
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 84698643 84702914 + Hsped.01g19890.1 Hepe01g1989 561099
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe01g1989 493 CDD homeodomain 373 434 IPR001356 GO:0003677(InterPro)
Hepe01g1989 493 ProSiteProfiles 'Homeobox' domain profile. 370 433 IPR001356 GO:0003677(InterPro)
Hepe01g1989 493 SMART KNOX1_2 182 226 IPR005540 GO:0003677(InterPro)|GO:0005634(InterPro)
Hepe01g1989 493 FunFam homeobox protein knotted-1-like 3 isoform X1 371 432 - -
Hepe01g1989 493 Pfam ELK domain 350 371 IPR005539 GO:0003677(InterPro)
Hepe01g1989 493 ProSiteProfiles ELK domain profile. 350 370 IPR005539 GO:0003677(InterPro)
Hepe01g1989 493 SMART HOX_1 372 437 IPR001356 GO:0003677(InterPro)
Hepe01g1989 493 MobiDBLite consensus disorder prediction 34 58 - -
Hepe01g1989 493 Gene3D - 371 432 - -
Hepe01g1989 493 SUPERFAMILY Homeodomain-like 372 437 IPR009057 -
Hepe01g1989 493 SMART ELK_2 350 371 IPR005539 GO:0003677(InterPro)
Hepe01g1989 493 SMART KNOX2_2 238 293 IPR005541 GO:0003677(InterPro)|GO:0005634(InterPro)
Hepe01g1989 493 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 127 433 IPR050224 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Hepe01g1989 493 Pfam KNOX2 domain 242 292 IPR005541 GO:0003677(InterPro)|GO:0005634(InterPro)
Hepe01g1989 493 Pfam Homeobox KN domain 390 429 IPR008422 GO:0003677(InterPro)|GO:0006355(InterPro)
Hepe01g1989 493 Pfam KNOX1 domain 184 225 IPR005540 GO:0003677(InterPro)|GO:0005634(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe01g1989 Hepe-Chr1:84698643 Hepe04g1740 Hepe-Chr4:72434067 7.17e-34 dispersed
Hepe04g0016 Hepe-Chr4:2893676 Hepe01g1989 Hepe-Chr1:84698643 2.61e-15 transposed
Hepe06g1595 Hepe-Chr6:66740123 Hepe01g1989 Hepe-Chr1:84698643 9.91e-129 transposed
Hepe01g1989 Hepe-Chr1:84698643 Hepe10g0232 Hepe-Chr10:2468647 1.39e-229 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
54883 PF03791 KNOX2 2.10E-21 No_clan Hepe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe01g1989 - - - 0.0