Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe01g2008 ATGGAGGATTGCACCATTGTCAAGGTTGATAGCTTGAACAAACAAGGTCTCCTCCTTGAGGTGGTTCAGATTTTAACAGATTTGAACCTTTCAATCTCAAAAGGCTACATTTCTTGTGATGCAGGCTGGTTCATGGATGTTTTTCATGTGAAAGATGAGAACAGCCACAAACTTACCGACCAGAAAGTCATCAACTCGATCCAGCAGGCCATTGGTACAACCAAAGGACCTGACAACTCGGCCAAAACCAGAGGCTATGCCAACAAACTTCTGAAATCTGATAACTCCGGTGAGCATACGGCCATTGAAATGACCGGCACCGACCGTCCCGGTCTATTCTCCGAGATATCCGCTGCATTGGCTGACCTCCATTGCAACATTGTGGAAGCTCATTCTTGGAGCCACAATGCTCACTTGGCCTGCGTTGCTTACATTTCGGACCAATCTACAGACAGTCCCATTGAGGATCCTCACCGGTTGGCCAGCATTGAGGAGCATCTCGCCACCGTCCTCAGGGCGGCCACCGCCCCTCTGATCACGAGTTGGACGCACACCCTGCAACAAGAAGTGAAGACATCAGCCACCATAACAACAAATGTGGAGCGGCGGCTGCACCAGCTCTTGCTCTCGGTTAAGGATTATGATTGGACCTCCGAAGCCATTTCGAAGAGACCCAAAAGCAATGAAGAGTGGAGGAAGACGACGGTGAGTATCGAAAGCTGTGATCAGAAAGGATACTCCATTGTCAGCATTGAGTGCAAGGATCGACCGAGGCTTATGTTTGACACAGTTTGTACTCTTACTGATATGCAATATGTAATTTTCCATGCTTCCATTAGCTCCGAAGGAGGTGCTGCTTTTCAGGAGTATTTCATCAGACATGTGAATGGGTACGCCTTGAATTCAGAGAACGACAAGGAAAGGGTGATAAAATGCTTAGAGGCAGCCATTGAACGTCGAGTTTGTGAGGGAGTGAGGCTGGAGTTATCTGCAAACAACAGGGTGGGATTGCTATCAGACATAACGAGGCTTCTGAGGGAAAATGGGCTGAATGTGGTGAGAGCAGACATAGCAACACAGGGAGAGAAGGCCATTAATGCATTCTATGTCAAAGATATTTCAGGCAAAGATGTAGACATGGAGATGGTGGAGTCCATGAAGAAGGAAATTGGCCCCATTGTTCTTCGAGTCAAGAACGAGATAAGCCCTCCATCCTCGCCTCAAATTACCAGGTCTCGTTTTTCCTTCAGTGACATGCTCAAGTCTCAGATCGAGCGCCTCTCTCACAACTTCATTGCCATCAGGCATTGA 1311 47.83 MEDCTIVKVDSLNKQGLLLEVVQILTDLNLSISKGYISCDAGWFMDVFHVKDENSHKLTDQKVINSIQQAIGTTKGPDNSAKTRGYANKLLKSDNSGEHTAIEMTGTDRPGLFSEISAALADLHCNIVEAHSWSHNAHLACVAYISDQSTDSPIEDPHRLASIEEHLATVLRAATAPLITSWTHTLQQEVKTSATITTNVERRLHQLLLSVKDYDWTSEAISKRPKSNEEWRKTTVSIESCDQKGYSIVSIECKDRPRLMFDTVCTLTDMQYVIFHASISSEGGAAFQEYFIRHVNGYALNSENDKERVIKCLEAAIERRVCEGVRLELSANNRVGLLSDITRLLRENGLNVVRADIATQGEKAINAFYVKDISGKDVDMEMVESMKKEIGPIVLRVKNEISPPSSPQITRSRFSFSDMLKSQIERLSHNFIAIRH 436
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 84828098 84830449 - Hsped.01g20080.1 Hepe01g2008 561118

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Hepe01g2008 436 SUPERFAMILY ACT-like 323 393 IPR045865 -
Hepe01g2008 436 SUPERFAMILY ACT-like 97 171 IPR045865 -
Hepe01g2008 436 SUPERFAMILY ACT-like 1 68 IPR045865 -
Hepe01g2008 436 Gene3D - 97 176 - -
Hepe01g2008 436 Gene3D - 325 399 - -
Hepe01g2008 436 PANTHER ACT DOMAIN-CONTAINING PROTEIN ACR4-RELATED 2 399 IPR040217 -
Hepe01g2008 436 ProSiteProfiles ACT domain profile. 326 404 IPR002912 -
Hepe01g2008 436 Pfam ACT domain 326 373 IPR002912 -
Hepe01g2008 436 Pfam ACT domain 101 167 IPR002912 -
Hepe01g2008 436 CDD ACT_ACR_2 100 173 - -
Hepe01g2008 436 CDD ACT_ACR_3 246 320 - -
Hepe01g2008 436 ProSiteProfiles ACT domain profile. 6 88 IPR002912 -
Hepe01g2008 436 ProSiteProfiles ACT domain profile. 101 181 IPR002912 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe01g2008 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe01g2008 Hepe-Chr1:84828098 Hepe05g1174 Hepe-Chr5:57409094 4.50e-125 dispersed
Hepe01g2008 Hepe-Chr1:84828098 Hepe03g1141 Hepe-Chr3:64646071 2.30e-128 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g502 . Blo12g01071 . Bda03g00076 . . Bma04g00073 . . . Cma01g01514 . . . . . . . . . . . . . Cla05g01724 Cam05g1837 Cec05g1851 Cco05g1908 Clacu05g1824 Cmu05g1708 Cre05g1839 Cone4ag1777 . . . Lsi04g02116 Csa03g04320 Chy04g00380 . . . . . . Bpe04g00062 . . Sed13g2012 Cmo01g01567 . . . . . . Cpe02g00442 Bhi09g02223 Tan01g3625 Cmetu04g2629 . Hepe01g2008 Mch11g0544 . . . . . . . . . . . Cme04g00426
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011487 0 2 0 1 1 1 1 1 1 1 1 1 2 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 31