Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe01g2025 ATGGTTTATTCCAGGAAGTTCAGAGGAGTCAGGCAGCGGCAGTGGGGCTCTTGGGTGTCAGAAATCCGCCATCCATTGCTGAAGAGAAGGGTGTGGCTGGGGACATTTGACACAGCTGAGGATGCAGCACGAGCGTATGATCAAGCAGCCATCTTGATGAACGGCCAAAACGCCAAGACCAATTTCCCTGCATCAAAAGACCAATCTGAAGAAGCCAGTCGTGGCCATGGATCTTCTCCATTGTCCCCAAAAGCACTTTCAGAGCTACTCAGCACAAAGCTCAGAAAGTGCTGCAAGAACCCATCTCCCTCCTTGACATGCCTGCGCCTCGACAGCGACAACGCCCACATTGGTGTCTGGCAGAAGCGCGCAGGCACTCGAGCCACCTCCAATTGGGTCATGAGGATTGAGCTAGGGAAGAAGGAGACACTCTTGTCGTCACCGTCTCCGTTGCCGTCGCCCGAATTGGCGAGCCAGGAGGCTGATGGCCACCAGGATGGAATTGATGAAGAAGATAGAATTGCAATGCAAATGATTGAAGAGTTGCTCAATTGGAACTGTCCTCTTCCTTCAACTTCAAGTTAA 585 51.97 MVYSRKFRGVRQRQWGSWVSEIRHPLLKRRVWLGTFDTAEDAARAYDQAAILMNGQNAKTNFPASKDQSEEASRGHGSSPLSPKALSELLSTKLRKCCKNPSPSLTCLRLDSDNAHIGVWQKRAGTRATSNWVMRIELGKKETLLSSPSPLPSPELASQEADGHQDGIDEEDRIAMQMIEELLNWNCPLPSTSS 194
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 84978406 84980247 + Hsped.01g20250.1 Hepe01g2025 561135
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe01g2025 194 Gene3D AP2/ERF domain 5 65 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Hepe01g2025 194 ProSiteProfiles AP2/ERF domain profile. 6 63 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Hepe01g2025 194 PRINTS Ethylene responsive element binding protein signature 7 18 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Hepe01g2025 194 PRINTS Ethylene responsive element binding protein signature 29 45 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Hepe01g2025 194 MobiDBLite consensus disorder prediction 59 84 - -
Hepe01g2025 194 SUPERFAMILY DNA-binding domain 6 65 IPR016177 GO:0003677(InterPro)
Hepe01g2025 194 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 5 145 IPR050913 -
Hepe01g2025 194 Pfam AP2 domain 6 55 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Hepe01g2025 194 SMART rav1_2 6 69 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Hepe01g2025 194 MobiDBLite consensus disorder prediction 144 172 - -
Hepe01g2025 194 CDD AP2 6 65 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Hepe01g2025 194 FunFam Ethylene-responsive transcription factor 2 5 64 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe01g2025 Hepe-Chr1:84978406 Hepe02g1370 Hepe-Chr2:17426347 1.60e-65 dispersed
Hepe01g2025 Hepe-Chr1:84978406 Hepe08g2535 Hepe-Chr8:66945677 1.37e-69 wgd
Hepe01g2025 Hepe-Chr1:84978406 Hepe09g0678 Hepe-Chr9:6424384 2.33e-71 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
54886 PF00847 AP2 3.90E-13 CL0081 Hepe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe01g2025 - - - 0.0