Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe01g2047 ATGAGTAGGGAAAATGTTGATTTTCAAGTTGAAGAGTGCTCTGGCAGAATCACGAGGGCACGGGCGAAAGAGCTAAGCGAATCAGGAGGCATTCTATGCTCCTCAAAATCTTCTGGAGGTCAGAATCAGAAGCACACTGTACGAGCTAACTCAAAAAGAATGGCACCTGATGAGATTAAGACTTGTTCAGTTTCTTCCAATGGCCTTCCTAATAAAAGGAGAGCAGTGCTCAAGGATGTGACTAACATTTCCACCAAAGGTTCTGATAAGAATTGCAACAATGCTTCTAATATTCAGGGTGCCAAACAATCTAGAAGAGTTTCTGCAAAAGCTAAGGCAAATGTGCCTTTAAATGTTTCTGTAGAAATTCTAGGAGCAGAAGAAGATGCAAACACTAGACTAGCCGATGATTTATCTAAAATAAGGGTGGTAGAATCACGAGAGGCCTCTTTACGAGAAACTTTGGACGAAAAAGAGAAAACAATGCAAACTATGTGTCACACCAGCAGAGAATGTGGAGTTTCAGATATGATTCTCTCTGTATCTTCAGAAGAATCTATCCCTCGGCCAAATGAAAAATATATGGCACCTGAACAATCGGGAACATCAAATGATAGAGGTATTATAGACATTGATTCAAACTCAAAATGTCTTCAATCATGCAGCATATATGCTCCAGACATATATGACAGGATACGCGTGACAGAGCTTGATCAAAGGGCCTCAACTAACTATATGGAACAGTTGCAGCAAGATATCACTGCAAACATGCGAGGAATACTGGTTGATTGGCTTGTAGAGGTATCTGAAGAATATAAGTTGGTTCCAGATACACTTTATCTCACTGTAAATGTTATTGATCGGTTTCTCGCTCAAAATCATATGGAAAAAAAGCGTCTTCAACTCCTCGGCATTGCAAGCATGCTAATCGCATCAAAATATGAGGAGATCTGTGCACCGCGGGTGGAAGATTTCTGCTTCATTACAGATAATACTTACACAAAAGGAGAGGTAGTAGCAATGGAGAGTGAAGTTTTGAACTTACTGCACTTTCGGCTATCTGTGCCCACTACAAAGACATTTCTGAGGAGATTCATACAATCAGCTCATGCTTCTTACAAGGTTCCTTGCATTGAACTTGAGTTTTTGGCCAATTATTTAGCTGAGTTGACTCTTGTTGAATACAGCTTCCTAAAGTTCCTTCCTTCTCTGATAGCCGCATCAGCCGTATTTCTTGCGAAATGGACACTTGACCAATCGGATCATCCATGGAATCCAACTCTAGAGCACTATACCAGTTACAACGTTAAAGAGCTTAAAACTGCAGTGCTTGCCCTCCAAGACTTGCAACTTAACACAAGTGGTTCCTCGCTAAATTCCATACGTCAAAAGTATAGACAATCGAAGTTCAAAGGCGTAGCGACATTATCATCAACTCGATCGATTCTATCACTATTTTGA 1461 40.52 MSRENVDFQVEECSGRITRARAKELSESGGILCSSKSSGGQNQKHTVRANSKRMAPDEIKTCSVSSNGLPNKRRAVLKDVTNISTKGSDKNCNNASNIQGAKQSRRVSAKAKANVPLNVSVEILGAEEDANTRLADDLSKIRVVESREASLRETLDEKEKTMQTMCHTSRECGVSDMILSVSSEESIPRPNEKYMAPEQSGTSNDRGIIDIDSNSKCLQSCSIYAPDIYDRIRVTELDQRASTNYMEQLQQDITANMRGILVDWLVEVSEEYKLVPDTLYLTVNVIDRFLAQNHMEKKRLQLLGIASMLIASKYEEICAPRVEDFCFITDNTYTKGEVVAMESEVLNLLHFRLSVPTTKTFLRRFIQSAHASYKVPCIELEFLANYLAELTLVEYSFLKFLPSLIAASAVFLAKWTLDQSDHPWNPTLEHYTSYNVKELKTAVLALQDLQLNTSGSSLNSIRQKYRQSKFKGVATLSSTRSILSLF 486
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 85134402 85141815 + Hsped.01g20470.1 Hepe01g2047 561157
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe01g2047 486 Gene3D - 227 475 - -
Hepe01g2047 486 MobiDBLite consensus disorder prediction 185 207 - -
Hepe01g2047 486 SUPERFAMILY Cyclin-like 219 353 IPR036915 -
Hepe01g2047 486 ProSitePatterns Cyclins signature. 258 289 IPR048258 -
Hepe01g2047 486 Pfam Cyclin, N-terminal domain 227 354 IPR006671 -
Hepe01g2047 486 PIRSF Cyclin_A_B_D_E 33 485 IPR046965 GO:0016538(InterPro)|GO:0044772(InterPro)
Hepe01g2047 486 MobiDBLite consensus disorder prediction 30 49 - -
Hepe01g2047 486 Pfam Cyclin, C-terminal domain 356 478 IPR004367 -
Hepe01g2047 486 SMART cyclin_7 360 448 IPR013763 -
Hepe01g2047 486 SMART cyclin_7 263 347 IPR013763 -
Hepe01g2047 486 FunFam Cyclin A1 343 475 - -
Hepe01g2047 486 SUPERFAMILY Cyclin-like 355 478 IPR036915 -
Hepe01g2047 486 SMART Cyclin_C_2 356 479 IPR004367 -
Hepe01g2047 486 FunFam Mitotic cyclin 6 241 341 - -
Hepe01g2047 486 Coils Coil 141 161 - -
Hepe01g2047 486 Gene3D - 241 354 - -
Hepe01g2047 486 CDD CYCLIN_AtCycA-like_rpt2 356 470 - -
Hepe01g2047 486 PANTHER CYCLINS 205 466 IPR039361 GO:0000079(PANTHER)|GO:0000307(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0016538(PANTHER)|GO:0044772(PANTHER)
Hepe01g2047 486 MobiDBLite consensus disorder prediction 29 56 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe01g2047 Hepe-Chr1:85134402 Hepe03g1583 Hepe-Chr3:72721886 5.08e-135 dispersed
Hepe01g2338 Hepe-Chr1:87913705 Hepe01g2047 Hepe-Chr1:85134402 9.72e-52 transposed
Hepe02g0012 Hepe-Chr2:280260 Hepe01g2047 Hepe-Chr1:85134402 1.11e-42 transposed
Hepe04g0519 Hepe-Chr4:57680920 Hepe01g2047 Hepe-Chr1:85134402 1.63e-47 transposed
Hepe04g1666 Hepe-Chr4:71896627 Hepe01g2047 Hepe-Chr1:85134402 3.99e-49 transposed
Hepe01g2047 Hepe-Chr1:85134402 Hepe10g0294 Hepe-Chr10:3124022 2.14e-136 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe01g2047 K06627 - csv:101204275 823.157