Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe01g2061 ATGGCGACACTGTCCGAAACACGGTCGCCGTTACCTTTGCTCTTCCGGCGGCATTCAAGTGGCGAAATAAGAAACTTGACGTCAGTTTCCAGCAGCCTCTTGCCGGCGTTTGGAACAGTTGTGAATAATGAAGGATACTCAAACCTGAACAAGTTCATTATAGTTCCATATGACAGAAGATATCGATGGTGGCAAACTTTCCTGGTAGTGCTAGTGGTGTACTCAGCGTGGGTATCTCCCTTTGAACTTGCCTTCAAGAAAGTGGCAACTGGGTCTCTTTTACCCGTTGATTTGGTGGTGGATGCATTCTTTTTCCTTGATATCGTCATGACCTTCTTCGTGGCTTACTTGGATAAATCCACATATCTCCTCGTTGATGATCATAAGAAGATAGCTCTACGTTACCTTACAAGCCTGTGGTTCCCCATGGACGTAGCCTCCACTCTTCCATTTCAGGTAATATCCAAAATTATAACTGGAAAGACGCAAAGTAGTGAGGCCTTCGGCTTCCTCAACTTACTTCGGTTCTGGCGGCTAAGGCGTGTTGGTGAACTCTTCACAAGGCTGGAGAAAGACATACGCTTTAGTTACTTCTATACAAGACTCGTCAAACTAATTTGTGTTACACTGTTGGCAGTTCATTCAGCTGGTTGTTTCTACTACTGGCTAGCAATTCATCATAAAGATTCAGAAAATACATGGATTGGAATCGAAGTCGAAGATTTTCAGAACAGAAGTATTTGGCTTGGGTACACCTATTCGATATATTGGTCCATTGTCACACTTGCTACTGTCGGTTATGGGGACTTGCATGCAGTTAATACAGGGGAGAAGATTTTTAGCATATGCTACATGCTATTCAACATTGGCCTCACATCTTATTTGATAGGAAACATGACAAATCTCATCGTTCACAGTGCTATCCGAACATTTATCATGAGGGATTCCATAAATGAGATACTGCGTTATGGAAGCAAGAATAGACTGCCAGAAGGCTTGAAAGACCAAATGTTGGCGCACATGCAGCTTAAGTTCAAGACAGCAGAGTTGAAGCAAGAAGAGGTGTTGGAGGATTTACCTAAAGCAATCAGATCCAGTATTGCTCAGCACCTTTTCCGTCAAACAGTTGAGAATGCATACTTATTCAAGAAGCTCTCCGAAGACCTTATCGTCCAATTGGTGTCTGAGATGAAAGCAGAGTACTTTCCACCTAAAGTTGACATTATAATACAAAACGAGATACCAACAGATTTCTACATTTTGGTGTCTGGATCAGTGGATGTGATCACATACAAGACTGGAACTGAGCAGATTTTAGCAAAGCTAGAATCTCCACAGATGGCAGGGGAAATTGCTGTGATGTTGAATATCCCACAGCCATTTACAGTGAGAACTAGAAGACTCTCCCAAGTCATCAGGATCAGTCATCATCATTTTAAGCAAATTTTACTACCAAACAATGATGATGCAAAAATCCTTTTCTCCAACTTCACTGAGCACTTGAAGGGGTTAAAAAGGGAGGAGCAAAACGAAATACCCTACTTTTCAGAATTGCTGGAAGACCTAAATACAGAGCATACAGAACCGAATGAGACACAAAATCAGAGAGTACCAAATTATCATGGAGATCAAAAAACGGAAGGAATACCAGAAGCATCTAGACCATCGCCACCTACGGGTCGCATCAGGGTGATAATTTGTGAGCACCATCCAGATGAAAGTACAAAAGATGACAACAGTATGGGAAAACTGATACTTCTGCCTGAGTCAATTGAAGAACTTTTCGGATTGGCAGGTATTACAGTTAGATTTGTGTAA 1818 41.91 MATLSETRSPLPLLFRRHSSGEIRNLTSVSSSLLPAFGTVVNNEGYSNLNKFIIVPYDRRYRWWQTFLVVLVVYSAWVSPFELAFKKVATGSLLPVDLVVDAFFFLDIVMTFFVAYLDKSTYLLVDDHKKIALRYLTSLWFPMDVASTLPFQVISKIITGKTQSSEAFGFLNLLRFWRLRRVGELFTRLEKDIRFSYFYTRLVKLICVTLLAVHSAGCFYYWLAIHHKDSENTWIGIEVEDFQNRSIWLGYTYSIYWSIVTLATVGYGDLHAVNTGEKIFSICYMLFNIGLTSYLIGNMTNLIVHSAIRTFIMRDSINEILRYGSKNRLPEGLKDQMLAHMQLKFKTAELKQEEVLEDLPKAIRSSIAQHLFRQTVENAYLFKKLSEDLIVQLVSEMKAEYFPPKVDIIIQNEIPTDFYILVSGSVDVITYKTGTEQILAKLESPQMAGEIAVMLNIPQPFTVRTRRLSQVIRISHHHFKQILLPNNDDAKILFSNFTEHLKGLKREEQNEIPYFSELLEDLNTEHTEPNETQNQRVPNYHGDQKTEGIPEASRPSPPTGRIRVIICEHHPDESTKDDNSMGKLILLPESIEELFGLAGITVRFV 605
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 85258751 85267698 - Hsped.01g20610.1 Hepe01g2061 561171
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe01g2061 605 PRINTS EAG/ELK/ERG potassium channel family signature 108 117 IPR003938 GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro)
Hepe01g2061 605 PRINTS EAG/ELK/ERG potassium channel family signature 74 81 IPR003938 GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro)
Hepe01g2061 605 PRINTS EAG/ELK/ERG potassium channel family signature 97 107 IPR003938 GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro)
Hepe01g2061 605 PRINTS EAG/ELK/ERG potassium channel family signature 251 268 IPR003938 GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro)
Hepe01g2061 605 PRINTS EAG/ELK/ERG potassium channel family signature 295 304 IPR003938 GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro)
Hepe01g2061 605 PRINTS EAG/ELK/ERG potassium channel family signature 277 288 IPR003938 GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro)
Hepe01g2061 605 SUPERFAMILY Voltage-gated potassium channels 56 304 - -
Hepe01g2061 605 MobiDBLite consensus disorder prediction 526 559 - -
Hepe01g2061 605 Pfam Cyclic nucleotide-binding domain 401 483 IPR000595 -
Hepe01g2061 605 Gene3D - 63 305 - -
Hepe01g2061 605 ProSiteProfiles cAMP/cGMP binding motif profile. 381 500 IPR000595 -
Hepe01g2061 605 SUPERFAMILY cAMP-binding domain-like 310 500 IPR018490 -
Hepe01g2061 605 CDD CAP_ED 381 493 IPR000595 -
Hepe01g2061 605 Gene3D Jelly Rolls 345 511 IPR014710 -
Hepe01g2061 605 FunFam Potassium channel KAT3 63 305 - -
Hepe01g2061 605 FunFam Potassium channel KAT2 369 505 - -
Hepe01g2061 605 Pfam Ion transport protein 61 305 IPR005821 GO:0005216(InterPro)|GO:0006811(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Hepe01g2061 605 PANTHER POTASSIUM CHANNEL AKT1 23 520 IPR045319 GO:0005249(InterPro)|GO:0006813(InterPro)
Hepe01g2061 605 SMART cnmp_10 381 498 IPR000595 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe01g2061 Hepe-Chr1:85258751 Hepe07g1794 Hepe-Chr7:60604530 4.20e-167 dispersed
Hepe01g2061 Hepe-Chr1:85258751 Hepe09g0689 Hepe-Chr9:6524761 3.12e-168 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe01g2061 K21867 - csv:101215177 1069.3