Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe01g2064 ATGTCCGCTTCATCCGAAACTCCGATGATCGACGAGCCACCGTCCGCCGTCAGCAAGAAGGCCGCCAAGAAGGAGGCTGCCAAGCAAGAAAAGCTCCGCCGTCGCCAGGAAGCAGTCGCCGAAGCTGCCATTTCGTCTCTCAACGTTGAGGACGACCCGCTCTCCGCTAACTATGGCGATGTTCCACTCTCCGACCTCCAATCCAAGGAGGCTAAGAATGTCGAGAATTGGACTCAGGTTGGCTCTTTGACTGGCGAGCTTAAAGATAAGCATGTGCTTCTGCGGGGACGAATTCAGACGATCCGTGCTGTTGCCAAGAAGATGGCGTTTTTGGTGGTGAGAGAGAAGGGATTCACCGTGCAATGCGTTGTCTCGGAGCAGCCGGAGCTCGTCAGTCGACAGATGGTGAAGTATGTCGTTGGATTGAGCCGCGAGTCCATTGTCGACGTCGAAGGAGTCGTGTCCGTTCCCAATGTTGCCATTAAAGGTGCTACGCAGCAGGTGGAGATTCAAGTAATGAAAGTATATTGCATCAGTAAGGCAATGCCGACTCTGCCAATTAATATTGAAGATGCTGCTCGTAGTGAAGCTGAAATTGAGAAAGCATTGCAGGCTGGTGAGCAGCTAGTACGTGTTAATCAGGATACGCGATTGAACTACAGAGTCCTTGATATTCGAACTCCAGCTAATCAAGGAATTTTTCGCATTCAATGTCAAGTTGGAACCATATTTAGACAATATCTGTTGTCTGAAGGCTTTGTTGAAATCCATACACCAAAATTGATTGGGGGTTCAAGTGAAGGTGGTGCTTCTGTTTTTAAGTTGGATTACAAAGGTCAACCCGCTTGTTTGGCTCAGTCTCCTCAATTACATAAGCAAATGGCAATCTGTGGTGACTTTGGACGCGTATTTGAGATTGGTCCTGTTTTCAGAGCAGAGGACTCATTCACCCATAGACATTTATGTGAATTTACAGGACTTGATGTTGAAATGGAGATCAAAACTCATTATTCTGAGGTCATGAATATTGTGGACCGTTTATTTGTTGCAATGTTTGACAGTTTCAATGAAAACTGTAAGAAGGAGCTTGAAGCAATTGATAGACAGTATCCATTTGAACCGTTGAAGTACTTGCGAAACACTCTACGACTTACATTTGAGGAAGGAATTCAGATATTGAAGGATGCTGGCGTTGAAATTGATCCTCTTGGGGATCTTAATACAGAGTCTGAGAGGAAATTGGGACAGCTCGTCTTGGAGAAATATGGCACGGAGTTCTACATTCTTCACCGCTATCCTTTGGCTATTAGGCCATTCTATACTATGCCTTGCCATGATAACCCATCTTACAGTAACTCATTTGACGTCTTTATTCGAGGGGAAGAAATCATTTCTGGGGCTCAACGTGTTCACGTGCCAGAATTTCTAGCAGAACGCGCTCAAGCATGTGGGATCGAAGTAAAAACCATAGAAACGTACATCGATTCGTTCAGATATGGCGCTCCTCCGCACGGTGGATTTGGAGTAGGTTTGGAGCGTGTGGTGATGCTTTTCTGTGGTTTGAATAACATTCGCAAAACATCATTGTTCCCTCGCGACCCACAGAGGCTTGCTCCTTAA 1620 45.99 MSASSETPMIDEPPSAVSKKAAKKEAAKQEKLRRRQEAVAEAAISSLNVEDDPLSANYGDVPLSDLQSKEAKNVENWTQVGSLTGELKDKHVLLRGRIQTIRAVAKKMAFLVVREKGFTVQCVVSEQPELVSRQMVKYVVGLSRESIVDVEGVVSVPNVAIKGATQQVEIQVMKVYCISKAMPTLPINIEDAARSEAEIEKALQAGEQLVRVNQDTRLNYRVLDIRTPANQGIFRIQCQVGTIFRQYLLSEGFVEIHTPKLIGGSSEGGASVFKLDYKGQPACLAQSPQLHKQMAICGDFGRVFEIGPVFRAEDSFTHRHLCEFTGLDVEMEIKTHYSEVMNIVDRLFVAMFDSFNENCKKELEAIDRQYPFEPLKYLRNTLRLTFEEGIQILKDAGVEIDPLGDLNTESERKLGQLVLEKYGTEFYILHRYPLAIRPFYTMPCHDNPSYSNSFDVFIRGEEIISGAQRVHVPEFLAERAQACGIEVKTIETYIDSFRYGAPPHGGFGVGLERVVMLFCGLNNIRKTSLFPRDPQRLAP 539
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 85323708 85327643 + Hsped.01g20640.1 Hepe01g2064 561174

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Hepe01g2064 539 MobiDBLite consensus disorder prediction 17 32 - -
Hepe01g2064 539 CDD AsxRS_core 211 535 - -
Hepe01g2064 539 FunFam Aspartate--tRNA ligase, cytoplasmic 186 539 - -
Hepe01g2064 539 SUPERFAMILY Class II aaRS and biotin synthetases 209 538 IPR045864 -
Hepe01g2064 539 CDD AspRS_cyto_N 91 191 - -
Hepe01g2064 539 ProSiteProfiles Aminoacyl-transfer RNA synthetases class-II family profile. 234 531 IPR006195 -
Hepe01g2064 539 PANTHER ASPARTYL-TRNA SYNTHETASE 13 539 IPR004523 GO:0000166(InterPro)|GO:0003723(PANTHER)|GO:0004815(PANTHER)|GO:0004815(InterPro)|GO:0005524(InterPro)|GO:0005737(InterPro)|GO:0005829(PANTHER)|GO:0006422(InterPro)|GO:0006422(PANTHER)|GO:0017101(PANTHER)
Hepe01g2064 539 Coils Coil 19 39 - -
Hepe01g2064 539 Gene3D Bira Bifunctional Protein; Domain 2 186 539 IPR045864 -
Hepe01g2064 539 NCBIfam aspartate--tRNA(Asn) ligase 85 539 IPR004523 GO:0000166(InterPro)|GO:0004815(InterPro)|GO:0005524(InterPro)|GO:0005737(InterPro)|GO:0006422(InterPro)
Hepe01g2064 539 PRINTS Aspartyl-tRNA synthetase signature 301 314 IPR002312 GO:0000166(InterPro)|GO:0004812(InterPro)|GO:0005524(InterPro)|GO:0006418(InterPro)
Hepe01g2064 539 PRINTS Aspartyl-tRNA synthetase signature 284 296 IPR002312 GO:0000166(InterPro)|GO:0004812(InterPro)|GO:0005524(InterPro)|GO:0006418(InterPro)
Hepe01g2064 539 PRINTS Aspartyl-tRNA synthetase signature 494 508 IPR002312 GO:0000166(InterPro)|GO:0004812(InterPro)|GO:0005524(InterPro)|GO:0006418(InterPro)
Hepe01g2064 539 PRINTS Aspartyl-tRNA synthetase signature 454 470 IPR002312 GO:0000166(InterPro)|GO:0004812(InterPro)|GO:0005524(InterPro)|GO:0006418(InterPro)
Hepe01g2064 539 MobiDBLite consensus disorder prediction 1 32 - -
Hepe01g2064 539 Hamap Aspartate--tRNA(Asp) ligase [aspS]. 75 539 IPR004523 GO:0000166(InterPro)|GO:0004815(InterPro)|GO:0005524(InterPro)|GO:0005737(InterPro)|GO:0006422(InterPro)
Hepe01g2064 539 Gene3D - 50 184 IPR012340 -
Hepe01g2064 539 FunFam Aspartyl-tRNA synthetase, cytoplasmic 54 184 - -
Hepe01g2064 539 Pfam tRNA synthetases class II (D, K and N) 213 533 IPR004364 GO:0000166(InterPro)|GO:0004812(InterPro)|GO:0005524(InterPro)|GO:0006418(InterPro)
Hepe01g2064 539 SUPERFAMILY Nucleic acid-binding proteins 56 184 IPR012340 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe01g2064 K22503 - - csv:101222217 984.556
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g255 Blo01g01355 . Bda01g00715 . . . . Bma01g02143 . . . . Car09g00436 . . . Cpe06g00372 . . . . . . . . . . . . . . Cone4ag1839 Cone7ag1745 . . Lsi04g02172 Csa03g04379 Chy04g00323 . . . . . . . . . Sed05g1660 . Cmo09g00498 . . . . . . Bhi09g02315 Tan01g3700 Cmetu04g3175 . Hepe01g2064 Mch11g0600 . . . . . . . . . . . Cme04g00363
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007164 1 1 2 1 1 1 2 1 1 1 1 1 2 1 0 2 1 2 2 1 1 1 1 1 1 1 1 2 1 1 36