Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe01g2077 ATGTTCTCCAGCAGCCAGTTTGATTCCGGCAGTGGATTTACGTCCTCTCAGGTCAATGACTCCTCGTCGGCGAAGAGTCGAGATACGCCAGGTTTGGTTCCGGTAACTGTAAAACAGATAAGTGAAGCTTCGCAATCTGACGAAGAGAAGGCCAACTTTGTAATCAATGGCGCTGACATTACAAATGTTACAATTGTTGGGAAAGTCTCTGAGAAAGCTGAGAGGAATACTGACATCACATTCACTGTAGATGATGGAACAGGAAGAATTGGATGCAAAAGATGGGTAAACGATACTTTTGACACTAAGCAAATGGAAGAAATACAAGATGGGATGTATATACGGGTGAATGGGCATTTGAAAGTATTTCAAAGTAACAAGCAAATATTTGCATTCTCTGTAAGGCCTGTTACAAATTTTGATGAAATTACCTTCCACTTTATTGAATGCATACATGACCACTTGCGGAATTCCAAGTTACAGAAGCTCAATGGAGTTGGATCAACACAGTTCCAATCCTCGGATTCTGTGAAGACTCCAGTGAAGAATGGCTCTAGTGGATATCAGACACCATCTTCAGGACTATCGTCTGAGCAGCAAACTGTTGATGTTAAAAAGAATTGTGATGAATTGGTCCTTGATTATCTGCAGCTGCCCTCCAGCGTTGCCAAAGAAAGGGGAATACACAGAGATGAACTTTCCCAACAACTGAAAATTCCAATGGAGAAAATACTGGACTCCATAAGATCTCTTGAAGATGAAGGTTTGATATATTCCACTATAGATGAGTTTCATTTCAAGTCTGCTGCATAG 813 40.96 MFSSSQFDSGSGFTSSQVNDSSSAKSRDTPGLVPVTVKQISEASQSDEEKANFVINGADITNVTIVGKVSEKAERNTDITFTVDDGTGRIGCKRWVNDTFDTKQMEEIQDGMYIRVNGHLKVFQSNKQIFAFSVRPVTNFDEITFHFIECIHDHLRNSKLQKLNGVGSTQFQSSDSVKTPVKNGSSGYQTPSSGLSSEQQTVDVKKNCDELVLDYLQLPSSVAKERGIHRDELSQQLKIPMEKILDSIRSLEDEGLIYSTIDEFHFKSAA 270
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 85421335 85426826 - Hsped.01g20770.1 Hepe01g2077 561187
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe01g2077 270 SUPERFAMILY Nucleic acid-binding proteins 32 158 IPR012340 -
Hepe01g2077 270 Gene3D - 29 160 IPR012340 -
Hepe01g2077 270 FunFam replication protein A 32 kDa subunit A-like 25 159 - -
Hepe01g2077 270 Pfam OB-fold nucleic acid binding domain 63 136 IPR004365 GO:0003676(InterPro)
Hepe01g2077 270 CDD RPA2_DBD_D 62 155 - -
Hepe01g2077 270 MobiDBLite consensus disorder prediction 1 33 - -
Hepe01g2077 270 MobiDBLite consensus disorder prediction 1 29 - -
Hepe01g2077 270 Pfam Replication protein A C terminal 154 263 IPR014892 -
Hepe01g2077 270 PANTHER REPLICATION PROTEIN A-RELATED 9 268 IPR040260 GO:0000724(PANTHER)|GO:0000781(PANTHER)|GO:0003697(PANTHER)|GO:0005662(PANTHER)|GO:0006260(PANTHER)|GO:0006289(PANTHER)|GO:0035861(PANTHER)
Hepe01g2077 270 PIRSF RPA32 1 270 IPR014646 GO:0003677(InterPro)|GO:0005634(InterPro)|GO:0006260(InterPro)|GO:0006281(InterPro)|GO:0006310(InterPro)
Hepe01g2077 270 SUPERFAMILY Winged helix DNA-binding domain 205 268 IPR036390 -
Hepe01g2077 270 FunFam Replication protein A 32 kDa subunit 200 270 - -
Hepe01g2077 270 MobiDBLite consensus disorder prediction 169 199 - -
Hepe01g2077 270 Gene3D - 196 270 IPR036388 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe01g2077 Hepe-Chr1:85421335 Hepe09g0477 Hepe-Chr9:4408555 1.49e-78 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe01g2077 K10739 - csv:101220176 477.248