Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Hepe01g2077 | ATGTTCTCCAGCAGCCAGTTTGATTCCGGCAGTGGATTTACGTCCTCTCAGGTCAATGACTCCTCGTCGGCGAAGAGTCGAGATACGCCAGGTTTGGTTCCGGTAACTGTAAAACAGATAAGTGAAGCTTCGCAATCTGACGAAGAGAAGGCCAACTTTGTAATCAATGGCGCTGACATTACAAATGTTACAATTGTTGGGAAAGTCTCTGAGAAAGCTGAGAGGAATACTGACATCACATTCACTGTAGATGATGGAACAGGAAGAATTGGATGCAAAAGATGGGTAAACGATACTTTTGACACTAAGCAAATGGAAGAAATACAAGATGGGATGTATATACGGGTGAATGGGCATTTGAAAGTATTTCAAAGTAACAAGCAAATATTTGCATTCTCTGTAAGGCCTGTTACAAATTTTGATGAAATTACCTTCCACTTTATTGAATGCATACATGACCACTTGCGGAATTCCAAGTTACAGAAGCTCAATGGAGTTGGATCAACACAGTTCCAATCCTCGGATTCTGTGAAGACTCCAGTGAAGAATGGCTCTAGTGGATATCAGACACCATCTTCAGGACTATCGTCTGAGCAGCAAACTGTTGATGTTAAAAAGAATTGTGATGAATTGGTCCTTGATTATCTGCAGCTGCCCTCCAGCGTTGCCAAAGAAAGGGGAATACACAGAGATGAACTTTCCCAACAACTGAAAATTCCAATGGAGAAAATACTGGACTCCATAAGATCTCTTGAAGATGAAGGTTTGATATATTCCACTATAGATGAGTTTCATTTCAAGTCTGCTGCATAG | 813 | 40.96 | MFSSSQFDSGSGFTSSQVNDSSSAKSRDTPGLVPVTVKQISEASQSDEEKANFVINGADITNVTIVGKVSEKAERNTDITFTVDDGTGRIGCKRWVNDTFDTKQMEEIQDGMYIRVNGHLKVFQSNKQIFAFSVRPVTNFDEITFHFIECIHDHLRNSKLQKLNGVGSTQFQSSDSVKTPVKNGSSGYQTPSSGLSSEQQTVDVKKNCDELVLDYLQLPSSVAKERGIHRDELSQQLKIPMEKILDSIRSLEDEGLIYSTIDEFHFKSAA | 270 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 85421335 | 85426826 | - | Hsped.01g20770.1 | Hepe01g2077 | 561187 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Hepe01g2077 | 270 | SUPERFAMILY | Nucleic acid-binding proteins | 32 | 158 | IPR012340 | - | |
Hepe01g2077 | 270 | Gene3D | - | 29 | 160 | IPR012340 | - | |
Hepe01g2077 | 270 | FunFam | replication protein A 32 kDa subunit A-like | 25 | 159 | - | - | |
Hepe01g2077 | 270 | Pfam | OB-fold nucleic acid binding domain | 63 | 136 | IPR004365 | GO:0003676(InterPro) | |
Hepe01g2077 | 270 | CDD | RPA2_DBD_D | 62 | 155 | - | - | |
Hepe01g2077 | 270 | MobiDBLite | consensus disorder prediction | 1 | 33 | - | - | |
Hepe01g2077 | 270 | MobiDBLite | consensus disorder prediction | 1 | 29 | - | - | |
Hepe01g2077 | 270 | Pfam | Replication protein A C terminal | 154 | 263 | IPR014892 | - | |
Hepe01g2077 | 270 | PANTHER | REPLICATION PROTEIN A-RELATED | 9 | 268 | IPR040260 | GO:0000724(PANTHER)|GO:0000781(PANTHER)|GO:0003697(PANTHER)|GO:0005662(PANTHER)|GO:0006260(PANTHER)|GO:0006289(PANTHER)|GO:0035861(PANTHER) | |
Hepe01g2077 | 270 | PIRSF | RPA32 | 1 | 270 | IPR014646 | GO:0003677(InterPro)|GO:0005634(InterPro)|GO:0006260(InterPro)|GO:0006281(InterPro)|GO:0006310(InterPro) | |
Hepe01g2077 | 270 | SUPERFAMILY | Winged helix DNA-binding domain | 205 | 268 | IPR036390 | - | |
Hepe01g2077 | 270 | FunFam | Replication protein A 32 kDa subunit | 200 | 270 | - | - | |
Hepe01g2077 | 270 | MobiDBLite | consensus disorder prediction | 169 | 199 | - | - | |
Hepe01g2077 | 270 | Gene3D | - | 196 | 270 | IPR036388 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Hepe01g2077 | Hepe-Chr1:85421335 | Hepe09g0477 | Hepe-Chr9:4408555 | 1.49e-78 | dispersed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Hepe01g2077 | K10739 | - | csv:101220176 | 477.248 |