Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe01g2078 ATGGGCTGGGACTCCGGCCCGAAACCGTCACAGGCCCATAAATTTATCCCTATGGGCCAGCCCAAATGTAAATGGGCCGTAACCCGTCAACAAAGTGGACTCTCGGAGCCTACCTCTATAAATCCTCTTCGCTCCGTTTCGCATTCGGCATCTGAGGAAGAAGAAAGTAGAACTGTAGAAGAAGAGGAACCTGAATTCGAAGCTCGAGCTCGAGCTCATACCTGTACCGATACACGAAGATTCTCCGATTGCTTGTCTTCCCCGCTTCGTCCAGGTGAAGAATGGAGAAATGTATATGCAGCTCATGATCAGAGTTGGAAGTGTTTGTACTTCTTGATTTTCATACATTTGGTTGGTTGCTTGAAGTTGCGAAGCCGAATAATGCCTCGTAAGGTGAACCATGGGTTAGATTACGATGAAGATTACGACGAGTACGACGATTATGATTATTACGAAAACGATTTCGACGTAGAAGAAAAAGAAAAAACACCTGTGGCTAAGGAAGAAACAAAGGGGCATAAGCTTTGGCGATGTCCGATTTGCACTTACGACAATGAAGACAGTTTTTCTGCTTGTGATATATGTGGCGTTCTGCGCAACCCTTTGGTCAACAAGAGCAATACTTTTGATGACAGAACAGTTGAGAACATCTGCAAAGACTCTGGAGTATCCATAATGGCCAAGTCTCTCTTTGCATCGTCGCCAAATCAAATACCCGAAAGGGCTGTAAAATTTCAAGAGCAGGGCGATAAATTTGAGAAGGAAAGAGAAGATAACATCCACAAGATTGGGAATATCCGGGGCCATTCGCATGAATTCCATAATGCTTCTAGTACCTGTAGTCATTTCTGTACAAATATAGTCCCTTTCGAGTTTGATATTCCATCCCCAGATGATGTCGTTTCTAATGGATTGCGTTCCTCCAAAGTTGGTTTAAAAGCAGTCAGCCACAACGATTTCAACTCTTCAGTATTATCTACAGACATCACTAAGAAAGGTGCAAATAATGCAGCATCTTCAAAAAGTGCATATAGCTCGTCTGCTGTATTGCCAACGGGCAAATTAGGCAGTATAGGAGGAACACAGTTTAGTACCAAAAGTTCAGACAGCTCAGGCACCTCAATTGGAAAAAGTACAGTGGTCATTCAAGAGCACAATAGGTCAATGAGTGTAACAACAAACTTACAATCACGTGATAACAGGTCATCAAGCACTTCCACATCAAAGTCAGGAGGCAAATTTGACAGCATGGATGAGAGCAGTAACTCTTCTGTGGATAGGGAAAAGCCCCAAAGTATTGCTGGTAGTTTGAACAAAATGGTTCTAAATGTCAATTCTGCCTATGCAAATTATATTAGTGGGCTAGGAAAAACATCAAATGTTCAGTATAAGCATGATAAATGGATGCTACCTGACAAAGCTGTAGATACTTTGACTCAGCTGAATCTTGCTATAGTTGGTCATGTTGATTCTGGAAAATCTACTCTCTCAGGAAGACTTTTGCACCTATTGGGACGTGTGTCCCAAAAAGAAATGCACAAATATGAAAAAGAAGCAAAGTCCTTGGGCAAGGGTTCCTTTGCTTATGCCTGGGCACTGGATGAGAGTGCAGAAGAAAGAGAGAGAGGAATAACTATGACTGTCGGTGTTGCTTATTTTGATTCTAAAAGGTATCATGTTGTTGTGCTCGATTCCCCAGGCCATAAAGATTTTGTTCCAAACATGATATCTGGGGCAACACAAGCTGATGCCGCAGTTCTAGTTATAGATGCATCTGTTGGTGCATTTGAAGCTGGTATGGACGGTTCGAAGGGGCAGACAAGGGAACATGTGCAATTAATCAGGAGCTTTGGTGTAGATCAGATTATTGTTGCAGTTAACAAAATGGATGTGGTGGAGTATTCCAAAGAGCGCTATGAATTTATTAAGCTGCAACTTGGAACATTTTTTCGTTCTTGTGGTTATAAAGATTCATCATTGTCTTGGATTCCATTGAGTGCCATGGCAAATCAAAATCTGGTGACTGCCCCGTCTGATGTTCAAATTTTGTCCTGGTATCGTGGACCTAATCTTTTGGAGGCAATCGATTCCCTACAATCACCCACTAGAGATTTCTCAAAGCCACTGCTTATGCCGATATGCGACGTTATTAGATCAATTTCACTTGGTCAAGTGTCTGCCTGTGGCAAACTGGAAGCTGGAGCTCTCCAGTCTGGATCCAAGGTTCTTGTCATGCCATCTGGAGAAAGAGGCACTGTGCGCAGTTTAGAACGCAATTCTAAGGCTTGCAAAATTGCAAGAGCAGGGGACAACGTGACTGTTAGTCTACAAGGAGTTGAAACAAGTAGCGTGCTGGCTGGGGGTGTCCTATGTCATCCTGATTTTCCTGTTGCTATTGCAAAACACTTGGAATTGAAGATTCTCACTTTGGAGCTTGCAACACCGATATTAATAGGATCTCAGGTTGAAATTCATATACACCATGTGAAGGAGGCTGCTAGAGTTTCAAGGATAGTGTCGTTGCTTGATGCGAAGACGGGAAAGGTTGCGAAGAAGGCACCGCGTTGTCTCAGTGCTAAACAAAGTGCAGTCATTGAGGTTGTTTTGCAAAGTCCAGTTTGTGTGGAAGCATTCTCGACTAGTCGAGCTCTCGGGCGGGTATTTCTGAGATCAATGGGCAGAACTATAGCCGTCGGCATCATCACCCAACTAATCGGAGTTCCTGAATAA 2730 43.19 MGWDSGPKPSQAHKFIPMGQPKCKWAVTRQQSGLSEPTSINPLRSVSHSASEEEESRTVEEEEPEFEARARAHTCTDTRRFSDCLSSPLRPGEEWRNVYAAHDQSWKCLYFLIFIHLVGCLKLRSRIMPRKVNHGLDYDEDYDEYDDYDYYENDFDVEEKEKTPVAKEETKGHKLWRCPICTYDNEDSFSACDICGVLRNPLVNKSNTFDDRTVENICKDSGVSIMAKSLFASSPNQIPERAVKFQEQGDKFEKEREDNIHKIGNIRGHSHEFHNASSTCSHFCTNIVPFEFDIPSPDDVVSNGLRSSKVGLKAVSHNDFNSSVLSTDITKKGANNAASSKSAYSSSAVLPTGKLGSIGGTQFSTKSSDSSGTSIGKSTVVIQEHNRSMSVTTNLQSRDNRSSSTSTSKSGGKFDSMDESSNSSVDREKPQSIAGSLNKMVLNVNSAYANYISGLGKTSNVQYKHDKWMLPDKAVDTLTQLNLAIVGHVDSGKSTLSGRLLHLLGRVSQKEMHKYEKEAKSLGKGSFAYAWALDESAEERERGITMTVGVAYFDSKRYHVVVLDSPGHKDFVPNMISGATQADAAVLVIDASVGAFEAGMDGSKGQTREHVQLIRSFGVDQIIVAVNKMDVVEYSKERYEFIKLQLGTFFRSCGYKDSSLSWIPLSAMANQNLVTAPSDVQILSWYRGPNLLEAIDSLQSPTRDFSKPLLMPICDVIRSISLGQVSACGKLEAGALQSGSKVLVMPSGERGTVRSLERNSKACKIARAGDNVTVSLQGVETSSVLAGGVLCHPDFPVAIAKHLELKILTLELATPILIGSQVEIHIHHVKEAARVSRIVSLLDAKTGKVAKKAPRCLSAKQSAVIEVVLQSPVCVEAFSTSRALGRVFLRSMGRTIAVGIITQLIGVPE 909
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 85434778 85442430 + Hsped.01g20780.1 Hepe01g2078 561188
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe01g2078 909 SUPERFAMILY EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 801 905 IPR009001 -
Hepe01g2078 909 CDD EF1_alpha 482 701 - -
Hepe01g2078 909 PANTHER TRANSLATION FACTOR 479 902 IPR050100 GO:0003924(PANTHER)|GO:0006412(PANTHER)
Hepe01g2078 909 Gene3D Translation factors 706 795 - -
Hepe01g2078 909 Pfam GTP-eEF1A C-terminal domain-like 803 902 IPR054696 -
Hepe01g2078 909 Gene3D - 471 703 IPR027417 -
Hepe01g2078 909 CDD HBS1_C_III 796 904 - -
Hepe01g2078 909 MobiDBLite consensus disorder prediction 381 430 - -
Hepe01g2078 909 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 478 702 IPR000795 GO:0003924(InterPro)|GO:0005525(InterPro)
Hepe01g2078 909 SUPERFAMILY Translation proteins 701 795 IPR009000 -
Hepe01g2078 909 Gene3D Translation factors 799 906 - -
Hepe01g2078 909 FunFam elongation factor 1-alpha isoform X4 799 907 - -
Hepe01g2078 909 MobiDBLite consensus disorder prediction 381 419 - -
Hepe01g2078 909 Pfam Elongation factor Tu domain 2 728 791 IPR004161 GO:0005525(InterPro)
Hepe01g2078 909 PRINTS GTP-binding elongation factor signature 541 549 IPR000795 GO:0003924(InterPro)|GO:0005525(InterPro)
Hepe01g2078 909 PRINTS GTP-binding elongation factor signature 577 588 IPR000795 GO:0003924(InterPro)|GO:0005525(InterPro)
Hepe01g2078 909 PRINTS GTP-binding elongation factor signature 561 571 IPR000795 GO:0003924(InterPro)|GO:0005525(InterPro)
Hepe01g2078 909 PRINTS GTP-binding elongation factor signature 482 495 IPR000795 GO:0003924(InterPro)|GO:0005525(InterPro)
Hepe01g2078 909 PRINTS GTP-binding elongation factor signature 622 631 IPR000795 GO:0003924(InterPro)|GO:0005525(InterPro)
Hepe01g2078 909 MobiDBLite consensus disorder prediction 1 70 - -
Hepe01g2078 909 FunFam Translation elongation factor EF-1 705 795 - -
Hepe01g2078 909 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 464 712 IPR027417 -
Hepe01g2078 909 ProSitePatterns Zinc finger RanBP2-type signature. 176 195 IPR001876 -
Hepe01g2078 909 SUPERFAMILY Ran binding protein zinc finger-like 172 199 IPR036443 -
Hepe01g2078 909 FunFam Elongation factor 1 alpha-like protein 471 702 - -
Hepe01g2078 909 Pfam Elongation factor Tu GTP binding domain 481 697 IPR000795 GO:0003924(InterPro)|GO:0005525(InterPro)
Hepe01g2078 909 MobiDBLite consensus disorder prediction 25 47 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe01g2078 Hepe-Chr1:85434778 Hepe02g2977 Hepe-Chr2:79016581 2.49e-85 dispersed
Hepe01g2078 Hepe-Chr1:85434778 Hepe08g0870 Hepe-Chr8:7899664 9.22e-86 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe01g2078 K14416 - csv:101219939 1268.06