Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe01g2080 ATGTCATCAGCCTTTTCGCCACCAGATAACAATGGCGGAAGCAATGCTGGAGCAACTACTGTCTATGTAATTTTGAGCTTGGTGATTTTTGCTGTCATTGGTGCAATCTCTTGCTGCTTTGCTAGGAAAGTTAAGCAAGGCATTGTAAGAGAGTTGCAAAATGTAGTTGCTTCATCTACACCAAACATTGCACATTTACCTATCCCAAATTCAGTTCCAGTTTGGGAAATCGATCAACCGACAATGGAGAAGTTCATCCGAGAAATGGCGGAAGAAAGGCCTGTAAGGTTCACCGCTCAACAGCTATATTGTTTCACGAGCAATTATTCAACACCACTCGGGTCTGGAGGATTCGGTACGGTCTACGAAGGACAGTTCCCAAATGGGGTGAAGATTGCTGTGAAGGTTTTGAAGAGGAACTCGGACAGGCAGGCCGAGGAGCAATTTATGGCTGAGGTAGGAACAATTGGCAGAACTTACCATATAAACTTGGTTAGGCTTTATGGTTTTTGTTATGACCAATATATGGGTGCACTGGTATTTCAATACATGGAAAATGGATCTCTGGATAAGTACTTATTTGGAAAAAATCAAGAAATTGATTGGGGGAAGTTACACGATGTAGCCATTGGTACTGCTAAAGGTCTTGCTTACTTGCATGAGGAATGCCAACAAAGAATCATTCATTATGACATTAAGCCTGCTAACATTCTGTTGGATGCAAATTTCTCTCCCAAAGTTGGTGATTTTGGACTTGCCAAGCTTTGCAACAGGGATAGCACTCATATATCTCTCACTGGCTATCGAGGTACCCCCGGATACTCGGCACCGGAGTTTCTATTGGGCAGTTATCCAATAACGCACAAATGCGATGTGTATAGCTTCGGAATGGTATTGTTCGAGATTGTTGGAAGAAAAAGGAATGCTGGTATTACTGATTCCGGGAACCCGAATTGGTTTCCACTACACGTGTGGGAGAATTACGAAAAGGGCGAGTTAGATTCATTTACTCGAACGTGTGGCATTGAAGAGAATGATCAAGAGAGAGCAAACAGAATGTGCGAGGTGGCTTTGTGGTGCGTTCAAGACTCTCCCGACGAGCGACCACCGATGAGTGCAGTGGTGAAGATGCTCGAGGGAGGAGTAGAAATAATGCCACCACCAAAGCCATTTCTCTACTTCAATCTAACTTCAAAAAGGAACAGTAAAGTGAATCTGCAACAAGCTAGTAGTAGTTCAGATTATTCTTCGTCCACCAATGAAGAGAGTGGTTCATATTGGTACAAGAAAGCTACTCCGATAATGAAGAGGTACGAAATACAGATGGCTAGTTCTTGA 1338 43.12 MSSAFSPPDNNGGSNAGATTVYVILSLVIFAVIGAISCCFARKVKQGIVRELQNVVASSTPNIAHLPIPNSVPVWEIDQPTMEKFIREMAEERPVRFTAQQLYCFTSNYSTPLGSGGFGTVYEGQFPNGVKIAVKVLKRNSDRQAEEQFMAEVGTIGRTYHINLVRLYGFCYDQYMGALVFQYMENGSLDKYLFGKNQEIDWGKLHDVAIGTAKGLAYLHEECQQRIIHYDIKPANILLDANFSPKVGDFGLAKLCNRDSTHISLTGYRGTPGYSAPEFLLGSYPITHKCDVYSFGMVLFEIVGRKRNAGITDSGNPNWFPLHVWENYEKGELDSFTRTCGIEENDQERANRMCEVALWCVQDSPDERPPMSAVVKMLEGGVEIMPPPKPFLYFNLTSKRNSKVNLQQASSSSDYSSSTNEESGSYWYKKATPIMKRYEIQMASS 445
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 85450105 85453154 + Hsped.01g20800.1 Hepe01g2080 561190

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Hepe01g2080 445 Gene3D Transferase(Phosphotransferase) domain 1 184 384 - -
Hepe01g2080 445 ProSitePatterns Serine/Threonine protein kinases active-site signature. 227 239 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Hepe01g2080 445 ProSiteProfiles Protein kinase domain profile. 107 392 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Hepe01g2080 445 SMART serkin_6 107 378 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Hepe01g2080 445 PANTHER OS07G0415500 PROTEIN 19 417 - -
Hepe01g2080 445 ProSitePatterns Protein kinases ATP-binding region signature. 113 135 IPR017441 GO:0005524(InterPro)
Hepe01g2080 445 SUPERFAMILY Protein kinase-like (PK-like) 97 407 IPR011009 -
Hepe01g2080 445 Pfam Protein tyrosine and serine/threonine kinase 111 378 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Hepe01g2080 445 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 184 388 - -
Hepe01g2080 445 Gene3D Phosphorylase Kinase; domain 1 80 183 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe01g2080 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe01g2080 Hepe-Chr1:85450105 Hepe01g2082 Hepe-Chr1:85460677 3.72e-182 dispersed
Hepe01g2080 Hepe-Chr1:85450105 Hepe01g2081 Hepe-Chr1:85455024 1.15e-196 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g210 . . . . Bpe02g01248 . . . . . . . Car09g00450 . . . Cpe06g00388 . . . . . . . Cla05g01795 . . . . . . . . . . Lsi04g02188 Csa03g04396 Chy04g00306 . . . Bda01g01002 . . . . . . . Cmo09g00514 . . . . . . Bhi09g02350 . . . Hepe01g2080 Mch11g0619 . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000610 0 8 0 0 0 4 2 4 5 4 3 4 3 4 3 3 4 2 3 1 4 2 3 5 5 3 5 7 7 4 102
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
72490 PF07714 PK_Tyr_Ser-Thr 1.40E-45 CL0016 Hepe PK