Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe01g2092 ATGGCGGTCGATCTGATGAGTTTTCCAAAGATGGATGATCAGATGGCGATACAGGAGGCTGCCTCCCAAGGATTGAAGAGCATGGAGCATCTGATTCGTCTTCTCTCTCACAAGCAACCTTCAAACCATGTCGATTGCTCTGACCTAACTGACGCAACCGTTACGAAGTTCAAGAAAGTGATTTCTCTCCTCAATCGCACCGGCCACGCTCGGTTCCGGCGAGGTCCGGTTTCCTCGACCTCGTCTTCGTCGTCTGGTTCATCTGCTCGTCTCTCCGTTCCTCAAACTCAGGCGATGAATCTAACTCCTACTCCGTTTTCTGCTCCGTCGTTCACCGCTCCGGCCACCGTTGCTCAGCCGCAGGCTAAACTCGCTGCGGCGGCCAACTTCCTCCAGTCGCAGCCTCAGAGTATGACTCTCGATTTCACCAGGCCGAATATTCTGAACTCTAACCCTAAGGGAACCGATTTGGAATTTTCTAAGGAAACCTTCAGCGTGTCTAATTCGAGCTCCTCGTTTATGTCCTCTGCCATCACCGGAGACGGCAGCGTATCCAACGGAAAATTAGGAACGTCGATCTTTTTGGCACCGGCGCCGACTGCTTCCGGCGGAAAGCCACCGCTCTCGGCCGCACCGTACAAGAAGAGGTGTCACGAACACGATCATTCCGAAGATTTGTCCGGAAAATTCTCTGGTTCTACCTCTGCTTCCGGCAAGTGCCATTGCTCGAAAAGAAGGAAAAATCGTATGAAGAAGACAATTCGTGTACCGGCGATTAGTTCGAAAATCGCCGATATTCCACCGGACGAGTATTCGTGGAGGAAGTACGGTCAGAAGCCGATCAAGGGATCTCCATACCCACGGGGATATTACAAGTGTAGCACGATGAGGGGTTGTCCGGCGAGGAAACACGTGGAGAGAGATCCGAATGATCCGGCGATGTTGATTGTAACGTACGAAGGGGAGCACCGCCATACGCAGATCTCGTTGCCGGAAAATATGGCCGCCGGAGTATCTTTAGTTTTTGAGTCAACTTGA 1038 52.02 MAVDLMSFPKMDDQMAIQEAASQGLKSMEHLIRLLSHKQPSNHVDCSDLTDATVTKFKKVISLLNRTGHARFRRGPVSSTSSSSSGSSARLSVPQTQAMNLTPTPFSAPSFTAPATVAQPQAKLAAAANFLQSQPQSMTLDFTRPNILNSNPKGTDLEFSKETFSVSNSSSSFMSSAITGDGSVSNGKLGTSIFLAPAPTASGGKPPLSAAPYKKRCHEHDHSEDLSGKFSGSTSASGKCHCSKRRKNRMKKTIRVPAISSKIADIPPDEYSWRKYGQKPIKGSPYPRGYYKCSTMRGCPARKHVERDPNDPAMLIVTYEGEHRHTQISLPENMAAGVSLVFEST 345
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 85524699 85526613 - Hsped.01g20920.1 Hepe01g2092 561202
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe01g2092 345 SMART WRKY_cls 267 327 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Hepe01g2092 345 Pfam Plant zinc cluster domain 214 265 IPR018872 -
Hepe01g2092 345 Pfam WRKY DNA -binding domain 269 325 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Hepe01g2092 345 PANTHER WRKY TRANSCRIPTION FACTOR 21-RELATED 16 329 IPR044810 GO:0003700(InterPro)
Hepe01g2092 345 FunFam WRKY transcription factor 65 251 328 - -
Hepe01g2092 345 ProSiteProfiles WRKY domain profile. 262 328 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Hepe01g2092 345 MobiDBLite consensus disorder prediction 72 93 - -
Hepe01g2092 345 Gene3D WRKY domain 246 320 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Hepe01g2092 345 SUPERFAMILY WRKY DNA-binding domain 265 326 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Hepe01g2092 345 MobiDBLite consensus disorder prediction 74 93 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe01g2092 Hepe-Chr1:85524699 Hepe09g0437 Hepe-Chr9:3944685 2.01e-92 dispersed
Hepe01g2092 Hepe-Chr1:85524699 Hepe01g1792 Hepe-Chr1:82975299 2.94e-67 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
54890 PF03106 WRKY 6.50E-26 CL0274 Hepe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe01g2092 - - - 0.0