Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe01g2112 ATGGAGTCTCGATTTTCGCTCGTCTTTTCCTTACTCTCTTTTGCCGTTGTTGTAAGTCGTGCCGATCTCTCGCCCGAACAATATTGGAGTTCCCTGTTGCCAAACACTTTGATGCCAAATGCCATTACGGATCTCCTAAGTTCGGACTTTGTAGAAGGTAAAAGTACATCAGTGAACGTTGGGAAAGGGGGAGTGCACGTGAACACCCATAAGGGGAAGTCTGGAGGCACCTCCGTTAACGTTGGGAAGGGAGGCGGCGTGAATGTCCGCACCGGTCACAAGGGGAAGCCAGTGTACGTTGGAGTTAAGCCAGGTCCTAATCCCTTCAATTATGTATATGCAGCCACACAAACCCAACTCCACGACGACCCAAATGCAGCCCTCTTCTTTTTGGAAAACAATCTTCGACCCGCTTCAAAACTCACCCTTCATTTTCCAAAAACATCACCAACAACATCCACTTTCTTACCTCGTCAGGTCTCAAAAACACTTCCATTCTCCTCAAACAAACTCCCCCAAATCCTCCACCGATTCTCCGCCAAACCCACAAGTTTGGAGGCTGTGTTGATCGAAAAGACAATCAAGGAATGCGAAGCACCTGGTATCATAGGAGAAGACAGGTATTGTGCGACATCGTTGGAGTCGATGCTCGATTTCAGCATCTCTAAATTAGGGAACAATGTGAAGGCAATCTCAACAGAAGTCGAGAAACAGACGGATTTGCAAAAGTTTACAATTTTAAATTCTGTAAAGAAATCGACACACGACAAGGCTGTTGTGTGCCACAAGTTGAGCTATCCTTATGCAGTGTTTTATTGTCATTCTACGAAACACACACGAGTTTATAAGGTTCGTTTGGTGGGTGCTGACGGGACAAAAGCGGACGCGGTGGCCGTATGCCACACTGACACGTCAGCTTGGAACCCAAAGCATTTGGCTTTTCGAGTGTTGAAGGTCAAGCCAGGGACCGTTCCAGTTTGCCACTTCCTTCCACAAGACCATGTCGTGTGGGTTTCGAAGTACTAG 1026 47.17 MESRFSLVFSLLSFAVVVSRADLSPEQYWSSLLPNTLMPNAITDLLSSDFVEGKSTSVNVGKGGVHVNTHKGKSGGTSVNVGKGGGVNVRTGHKGKPVYVGVKPGPNPFNYVYAATQTQLHDDPNAALFFLENNLRPASKLTLHFPKTSPTTSTFLPRQVSKTLPFSSNKLPQILHRFSAKPTSLEAVLIEKTIKECEAPGIIGEDRYCATSLESMLDFSISKLGNNVKAISTEVEKQTDLQKFTILNSVKKSTHDKAVVCHKLSYPYAVFYCHSTKHTRVYKVRLVGADGTKADAVAVCHTDTSAWNPKHLAFRVLKVKPGTVPVCHFLPQDHVVWVSKY 341
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 85760033 85762579 - Hsped.01g21120.1 Hepe01g2112 561222

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Hepe01g2112 341 PANTHER BURP DOMAIN PROTEIN USPL1-LIKE 13 340 IPR044816 -
Hepe01g2112 341 Pfam BURP domain 128 338 IPR004873 -
Hepe01g2112 341 MobiDBLite consensus disorder prediction 61 87 - -
Hepe01g2112 341 ProSiteProfiles BURP domain profile. 129 340 IPR004873 -
Hepe01g2112 341 SMART BURP_2 127 340 IPR004873 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe01g2112 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe01g2112 Hepe-Chr1:85760033 Hepe08g1026 Hepe-Chr8:9857987 3.54e-52 dispersed
Hepe01g2112 Hepe-Chr1:85760033 Hepe02g0520 Hepe-Chr2:5212671 2.70e-54 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g340 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Sed05g1616 . . . . . . . . Bhi09g02410 Tan01g3770 Cmetu04g1481 . Hepe01g2112 Mch11g0650 . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010252 2 1 0 2 1 1 1 0 1 0 1 1 0 1 1 1 1 2 1 1 0 1 1 1 1 1 1 1 1 4 31