Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe01g2135 ATGTCTTCCATTTCTCTTCTTCTCTTCTTCTTCTTCTTCTTCTTCCTCTCTTCTTCAATTCCCTCCATCTCCGCCGCCGCCAGAAACCTGGCCTTCTCCGACCACGCCCTGATTCTCGACTCATTCCCCTTCGAATACCACAACGGCCCTCTTCTCTCCGGCAACATCACCATCAATCTCATCTGGTACGGCAATTTCAATCCCTCCCAAAAATCCATCGTCCTCGATTTCATCACTTCCCTTTCTTCTTCTTCTTCCAAATCAATCATTTCTCCTCACCCCTCTGTTTCCACTTGGTGGAATTCCATTAACAAATACTACAATCTCGCCGCCAATTCCAAGAAACCCCCCCGTTTTTCTCTCTCGCTCGGCTCCCAAATTCTCGATTCGAAATGTTCCCTTGGGAAATCTCTAACCAATCGTGAAATCATTTCTCTGGCCTCCAAGGGTGGGCAGAAATACTCAATCAATGTGGTTCTAACGGCCGCGGATGTGACAGTCGACGGATTCTGTTTTAACAAATGTGGGTCTCATGGTTTTTCCGCCGGAGTTCCGATTAGAGGGAAGAGGTATAAATTTGGGTATATTTGGGTGGGTAATTCGGGAACTCAATGTCCGGGGCAGTGTGCTTGGCCGTTTCATCTGCCGGTGTACGGTCCGATGAATCCGCCGTTGGTGCCGCCGAACAAGGATGTGGGAATGGACGGCGTTATCATCAATTTGGCAGGGCTTCTAGCCGGAGCTGCGACGAATCCGTTTGGGAATGGGTTTTACCAGGGGCCGAAGGAAGCTCCGCTGGAGGCGGCGTCGGCCTGCACCGGAATATTTGGGAAAGGTGCTTATCCTGGGTATCCCGGGGAGCTTCCGGTGGACGCCGCCACCGGAGGGAGTTATAATGCGAATGGTTGCAATGGCCGGAAATATCTGCTTCCGGCGTTGTTTGATCCGACCACTTCCACTTGTTCTACTCTGGTTTGA 978 50.92 MSSISLLLFFFFFFFLSSSIPSISAAARNLAFSDHALILDSFPFEYHNGPLLSGNITINLIWYGNFNPSQKSIVLDFITSLSSSSSKSIISPHPSVSTWWNSINKYYNLAANSKKPPRFSLSLGSQILDSKCSLGKSLTNREIISLASKGGQKYSINVVLTAADVTVDGFCFNKCGSHGFSAGVPIRGKRYKFGYIWVGNSGTQCPGQCAWPFHLPVYGPMNPPLVPPNKDVGMDGVIINLAGLLAGAATNPFGNGFYQGPKEAPLEAASACTGIFGKGAYPGYPGELPVDAATGGSYNANGCNGRKYLLPALFDPTTSTCSTLV 325
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 86010236 86011215 + Hsped.01g21350.1 Hepe01g2135 561245

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Hepe01g2135 325 PANTHER PROTEIN EXORDIUM-LIKE 5 8 324 IPR006766 -
Hepe01g2135 325 Pfam Phosphate-induced protein 1 conserved region 45 324 IPR006766 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe01g2135 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe01g2133 Hepe-Chr1:86002079 Hepe01g2135 Hepe-Chr1:86010236 2.55e-156 dispersed
Hepe01g2135 Hepe-Chr1:86010236 Hepe10g0488 Hepe-Chr10:5666903 2.45e-134 dispersed
Hepe01g2134 Hepe-Chr1:86005897 Hepe01g2135 Hepe-Chr1:86010236 1.11e-160 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g432 . . . . . . . Bma01g02608 . . . . . . . . . . . . . . . . . . . . . . . Cone4ag1328 Cone7ag1269 . . Lsi04g02243 . . Cme03g01857 . Blo18g00130 . Bda13g01397 . . . Bma02g00137 . . . Cma12g00164 . . . . Cpe02g00368 Bhi09g02446 Tan01g3798 Cmetu04g0771 . Hepe01g2135 Mch11g0673 . . . . . . . . . . Chy03g01359 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0058710 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 1