Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe01g2151 ATGGCTCTGGTTCGTCTTCCTTGTTCTTCATCTTCCACATTCCTCCGCTCTAAACAACACCTCCCAATCTTCCTCGCCCCTCTCTCATGCCCGCAAAATCCATCTCATTCCATCAATGGCGACATCAATCTCTCTCTTTCTCGCTCTTCTCCCTCTCTTCTTTCTTCTACTTCCATTTTTTCTAGGGCTAACAGAACTACCAAGTTTATTTTCCAGTTCTCCTCAACCTCCCAAGACGAACCAATAGTAGCCAGTTCTCCTTCTCCTTCTGATACTGACGAGTTTTCTCAAACCAGATTGCTTGCGCAGAACGTGCCTTGGAATTCTACTCCTGAGGACATTCGTTCTCTGTTTGAGAAATATGGTACTGTCTTGGATGTGGAGCTTTCGATGTATAACAAGATCAGAAACAGGGGCTTGGCGTTTGTCACTATGGGATCGCCTGAGGAGGCCCTTGCGGCACTTAATAATCTCGAATCGTATGAATATGAGGGTCGTACTCTAAAGATTAATTATGCTAAGATTAAAAAAGAGAAACCCTCCCCTCAGGTGAAACCGAAACCAGTTACGTTTAATATATTTGTGGCGAATTTGTCATATGAAGCAAGAGCAAAGGACCTCAGGGAATTCTTTGATTCGGGGAGTGGTAGTGTAGATTCTGCACAAATTATTTTTCAGGAGAATCCGAGAAGGCCTTCTGGATATGGTTTTGTTGCCTTCAAAACCAAGAAGGATGCTGAAGCAGCCATTTCTGATTTCCAAGGGAAGACTTTCATGGGGCGATCACTTCGTGTTGCACGTAGTAAGCAGTTTGTGAAACTTCCTGAAGAGAAATCCCAATCTGAAGATACTTCAACTGATGGTGTGGAGCTAGCTAATGCTGCTGCGGAAGTTTAA 897 43.92 MALVRLPCSSSSTFLRSKQHLPIFLAPLSCPQNPSHSINGDINLSLSRSSPSLLSSTSIFSRANRTTKFIFQFSSTSQDEPIVASSPSPSDTDEFSQTRLLAQNVPWNSTPEDIRSLFEKYGTVLDVELSMYNKIRNRGLAFVTMGSPEEALAALNNLESYEYEGRTLKINYAKIKKEKPSPQVKPKPVTFNIFVANLSYEARAKDLREFFDSGSGSVDSAQIIFQENPRRPSGYGFVAFKTKKDAEAAISDFQGKTFMGRSLRVARSKQFVKLPEEKSQSEDTSTDGVELANAAAEV 298
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 86151553 86153532 - Hsped.01g21510.1 Hepe01g2151 561261

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Hepe01g2151 298 SUPERFAMILY RNA-binding domain, RBD 181 273 IPR035979 GO:0003676(InterPro)
Hepe01g2151 298 SUPERFAMILY RNA-binding domain, RBD 75 182 IPR035979 GO:0003676(InterPro)
Hepe01g2151 298 Gene3D - 61 179 IPR012677 -
Hepe01g2151 298 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 98 175 IPR000504 GO:0003723(InterPro)
Hepe01g2151 298 PANTHER OS02G0815200 PROTEIN 76 268 IPR050502 GO:0003729(PANTHER)|GO:0009535(PANTHER)|GO:1901259(PANTHER)
Hepe01g2151 298 MobiDBLite consensus disorder prediction 274 298 - -
Hepe01g2151 298 Gene3D - 180 290 IPR012677 -
Hepe01g2151 298 SMART rrm1_1 99 171 IPR000504 GO:0003723(InterPro)
Hepe01g2151 298 SMART rrm1_1 192 266 IPR000504 GO:0003723(InterPro)
Hepe01g2151 298 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 191 270 IPR000504 GO:0003723(InterPro)
Hepe01g2151 298 Pfam RNA recognition motif 193 264 IPR000504 GO:0003723(InterPro)
Hepe01g2151 298 Pfam RNA recognition motif 103 169 IPR000504 GO:0003723(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe01g2151 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe01g2151 Hepe-Chr1:86151553 Hepe03g1718 Hepe-Chr3:74118502 2.20e-14 dispersed
Hepe01g2151 Hepe-Chr1:86151553 Hepe03g0304 Hepe-Chr3:4214349 7.24e-10 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g454 . Blo12g00716 . . Bpe02g00125 . . Bma01g02601 . . . . . . . Cpe06g00441 . . . . . . . . . . . . . . . . Cone7ag1262 . . Lsi04g02259 Csa03g04470 Chy04g00231 . . . Bda11g00780 . . . . . Sed13g2155 . . . . . Car09g00508 . Cpe02g00355 Bhi09g02471 Tan01g3820 Cmetu04g0043 . Hepe01g2151 Mch11g0689 . Cla11g01404 Cam11g1461 Cec11g1489 Cco11g1485 Clacu11g1622 Cmu11g1439 Cre11g1858 . . . Cme04g00257
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009555 1 1 2 1 1 0 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 32