Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe01g2160 ATGGAGGACTTCGCCTTTCACGATGGCAACGTCTGCGGTTTGCTCAACAGCAGGCTCATCAACTTTCGTCAAGACCCCACTTATAGTTTTCCGATGCACTCATCATTCATCCAAAGACTCTCCCGGGAAAAGGAACTGGAGGGGCATCAGGGGTGTGTTAATGCAGTGGCCTGGAATTCTCGTGGTTCACTTTTGATATCTGGATCAGATGATACTCGGATAAACATCTGGAGCTATTCTGGTCGAAAGCTATTGCACTCTGTGGATACTGGCCACTCTGCAAACATATTTTGTACAAAATTTGTTCCTGAAACTTCTGATGAGCTTGTGGTGTCAGGAGCTGGGGATGCAGAGGTGCGGCTGTTTAATTTATCTCGCTTAGGAGGGAGTGGACATGATGATAATCCCATAGCTTCATCGGCTTTGTATCAGTGTCACACCAGAAGAGTAAAAAAATTAGCTGTGGAAATAGGGAATCCAAATGTAGTATGGAGTGCTAGTGAGGATGGGACTCTTAGACAACATGATTTTCGAGAGGGCATGTCTTGTCCTCCTGACGGAGCTTCTCACCAAGAATGTCACAATGTTCTACTTGATTTGCGGTGTGGAGCAAAGAGGTCACTGGCTGATCCTCCCAGACAAACCCTTGCTTTAAAATCTTGTGACATTAGTTCCACTAGGCCTCATTTACTTCTGGTTGGTGGAAGTGATGCATTTGCACGGTTATATGATAGAAGGATGCTGGCACCCTTGTCTTCCAGCCAAAAAAGGGCGTCGCCACCTCCTTGTGTTAACTACTTCTGTCCAATGCATCTCTCTGATCGGGTTCGCTCGGGTTTGCATCTGACTCATGTTACTTTTAGTCCGAATGGTGAAGAGATCCTGCTTAGCTATAGTGGAGAACACGTATATTTGATGAATGTAAATCATGTTTCCCCCACAGATGGTCGAAGTGCGATGCAGTATGCACCAGGAGATGTTTCTAAGTTAATGAGCTTCACTCCTATACTCAACGGATTGGAATTGCAGTATCCTATTTCCAATTTATCTAATGGTTTGCCTGTAAACATTGGTGTTAATGCAAAGCTTGATAAATGCAGAAAATTATTACAAATTGCTGAAAAATGCTTGGACGGTGGTAACTACTTTGGTGGAATTGAGGCATGCAATGAAATTTTGGATGGACGTGGTCGTAATATTGGGATTATTTTCAAGCACGATTCATTATGCATACGTGCTGCTTTATTACTCAAGCGGAGGTGGAAAAATGATGTTCATATGGCAATAAGAGATTGTTACAGTGCTAGGAAAATTGATCATTCCTCTTTCAGAGCACATTATTACATGTCGGAAGCTTTATCACAGCTGGGTAGACATAGGGAAGCCCTAGATTTTGCCTTTGCTGCTCAGTGTTTAGCCCCATCTAATCCTGAAGTGGCAGAGAAGGTGGAAAGTGTAAAGAGGGATCTCGCTGCAGCTGAATTGGAAAAATCAAATAAAGGCAATGATGGAGCTCTAAGATCAGCTCCATTAGGTGGAGTATTATCATTAAGTGAATTTCTTTACCGCTCAGATGCAAATAGTGATGTTTCACAAGATGGGCTGAGATCAGAAAGAGAAGATTCTGACTATGATGAGGAGGTGGAGCTGGACTTTGAAACCTTATCAGGTGATGAAGCTCATGATGTTGATCCCAACATTCTACATGGAAGTTTAAATCTTAGAATACATAGACGAGTTGATCCAGCGAGAGAGAGGATTGGCGCAAATGGCTCCTGTGGGTCTCCTTCATCATCACAAAATGATGGAATACTTTATCAGCCTGAACCCGTCATTGATATGAAGCAAAGATATGTTGGTCATTGTAATATTGGAACTGATATTAAACAAGCTAGTTTTCTCGGGCAAAGAGGTGAATATGTTGCCAGTGGAAGTGATGATGGTAGATGGTTTATTTGGGAAAAGGGAACTGGTAGACTGATTAAGATACTTTATGGAGATGGAGCTGTTGTGAATTGCGTGCAAAGCCATCCATTTGATTGTGCCATTGCCACTAGCGGGATCGACAATACCATAAAGCTATGGACTCCAACTGCTCCTGTCCCCTCGGTCGTAGCTGGTGAAGCGTTCGATGTGTTGGGTGCAATGGAGAAGAATCAGATCAAACTGTCCCGTAATAGAGAACCCATATTGCCTTTTGAAATTTTGGAGCGATTTAGGATGCATGATTTCTCAGAAGGAAGCCCTTATCCATTTGAATGTGGTCAGAGTTGA 2274 43.01 MEDFAFHDGNVCGLLNSRLINFRQDPTYSFPMHSSFIQRLSREKELEGHQGCVNAVAWNSRGSLLISGSDDTRINIWSYSGRKLLHSVDTGHSANIFCTKFVPETSDELVVSGAGDAEVRLFNLSRLGGSGHDDNPIASSALYQCHTRRVKKLAVEIGNPNVVWSASEDGTLRQHDFREGMSCPPDGASHQECHNVLLDLRCGAKRSLADPPRQTLALKSCDISSTRPHLLLVGGSDAFARLYDRRMLAPLSSSQKRASPPPCVNYFCPMHLSDRVRSGLHLTHVTFSPNGEEILLSYSGEHVYLMNVNHVSPTDGRSAMQYAPGDVSKLMSFTPILNGLELQYPISNLSNGLPVNIGVNAKLDKCRKLLQIAEKCLDGGNYFGGIEACNEILDGRGRNIGIIFKHDSLCIRAALLLKRRWKNDVHMAIRDCYSARKIDHSSFRAHYYMSEALSQLGRHREALDFAFAAQCLAPSNPEVAEKVESVKRDLAAAELEKSNKGNDGALRSAPLGGVLSLSEFLYRSDANSDVSQDGLRSEREDSDYDEEVELDFETLSGDEAHDVDPNILHGSLNLRIHRRVDPARERIGANGSCGSPSSSQNDGILYQPEPVIDMKQRYVGHCNIGTDIKQASFLGQRGEYVASGSDDGRWFIWEKGTGRLIKILYGDGAVVNCVQSHPFDCAIATSGIDNTIKLWTPTAPVPSVVAGEAFDVLGAMEKNQIKLSRNREPILPFEILERFRMHDFSEGSPYPFECGQS 757
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 86234987 86255035 - Hsped.01g21600.1 Hepe01g2160 561270

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Hepe01g2160 757 SUPERFAMILY TPR-like 362 481 IPR011990 GO:0005515(InterPro)
Hepe01g2160 757 ProSiteProfiles Trp-Asp (WD) repeats profile. 664 695 IPR001680 GO:0005515(InterPro)
Hepe01g2160 757 SMART WD40_4 136 176 IPR001680 GO:0005515(InterPro)
Hepe01g2160 757 SMART WD40_4 657 696 IPR001680 GO:0005515(InterPro)
Hepe01g2160 757 SMART WD40_4 39 78 IPR001680 GO:0005515(InterPro)
Hepe01g2160 757 SMART WD40_4 204 244 IPR001680 GO:0005515(InterPro)
Hepe01g2160 757 SMART WD40_4 611 654 IPR001680 GO:0005515(InterPro)
Hepe01g2160 757 SMART WD40_4 81 123 IPR001680 GO:0005515(InterPro)
Hepe01g2160 757 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 46 78 - -
Hepe01g2160 757 Gene3D - 32 333 IPR015943 GO:0005515(InterPro)
Hepe01g2160 757 Gene3D Tetratricopeptide repeat domain 358 506 IPR011990 GO:0005515(InterPro)
Hepe01g2160 757 Pfam WD domain, G-beta repeat 659 695 IPR001680 GO:0005515(InterPro)
Hepe01g2160 757 Pfam WD domain, G-beta repeat 44 78 IPR001680 GO:0005515(InterPro)
Hepe01g2160 757 ProSiteProfiles Trp-Asp (WD) repeats profile. 46 87 IPR001680 GO:0005515(InterPro)
Hepe01g2160 757 PANTHER WD REPEAT DOMAIN-CONTAINING FAMILY 11 731 IPR045151 GO:0005737(PANTHER)|GO:0045717(PANTHER)|GO:0080008(PANTHER)
Hepe01g2160 757 Gene3D - 613 706 IPR015943 GO:0005515(InterPro)
Hepe01g2160 757 FunFam Transducin family protein / WD-40 repeat family protein 565 733 - -
Hepe01g2160 757 SUPERFAMILY WD40 repeat-like 38 695 IPR036322 GO:0005515(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe01g2160 K11807 - - csv:101206836 1373.22
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe01g2160 Hepe-Chr1:86234987 Hepe08g0852 Hepe-Chr8:7736659 3.84e-38 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g482 . . . . Bpe02g00134 . . Bma01g02591 . . . Cma09g00587 . . . Cpe06g00448 . . . . . . . . . . . . . . . Cone4ag1309 . . . . Csa03g04480 Chy04g00221 . . . Bda11g00790 . . . . . . Cmo01g01684 Cmo09g00572 . . . Car09g00516 . . Bhi09g02483 . . . Hepe01g2160 Mch11g0699 . . . . . . . . . . . Cme04g00248
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005324 1 4 1 1 1 0 3 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 4 2 1 39