Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe01g2162 ATGAATTCAGAAAGCCCAGGCCCAACAAAGCCATACGCAGAGACAGAGCTGGACCACCGGCTTCCCCAAACCCATTACGCAATGAATAACAACAATCATCTCAAGAATCCCGCAATTTTCTCTCGATTTCTCTCCATTTTCCCGGATGCCAAACACTCTAGCACAATGTCGGGTGCGTGGGAAGACAATTCTACCGACTCCGATCGACAATCCGACCCCGATCATCAACATTCTCACATCAATTTCGATTTCTTCTCCGCCACCATTGTTAAACCCAAGGATTACTACAAAATTTTGGAGGTCGATTACGATGCTACGGACGATGACATTCGATCCAATTACATACGACTGGCTTTGAAATGGCATCCTGACAAGCAGAAAGATCACGGCGGCGCCACTTCCAGATTTCAGGATATAAACGAGGCATATCAAGTTTTAAGTGATCCTTCTAGAAGGCAGGAATACGACGAGAAAGGGATGCTTTATGTAAATGATGATAACATAGTGGATTATCTCAAGCGATACAAAGGCCTTATTTTGACTTGTAATGGCCTCGGTATGAAGCTTTCAATTTGGTGA 579 44.21 MNSESPGPTKPYAETELDHRLPQTHYAMNNNNHLKNPAIFSRFLSIFPDAKHSSTMSGAWEDNSTDSDRQSDPDHQHSHINFDFFSATIVKPKDYYKILEVDYDATDDDIRSNYIRLALKWHPDKQKDHGGATSRFQDINEAYQVLSDPSRRQEYDEKGMLYVNDDNIVDYLKRYKGLILTCNGLGMKLSIW 192
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 86265947 86268547 - Hsped.01g21620.1 Hepe01g2162 561272

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Hepe01g2162 192 Pfam DnaJ domain 94 156 IPR001623 -
Hepe01g2162 192 CDD DnaJ 94 148 IPR001623 -
Hepe01g2162 192 SMART dnaj_3 93 151 IPR001623 -
Hepe01g2162 192 SUPERFAMILY Chaperone J-domain 89 173 IPR036869 -
Hepe01g2162 192 ProSiteProfiles dnaJ domain profile. 94 159 IPR001623 -
Hepe01g2162 192 Gene3D DnaJ domain 85 173 IPR036869 -
Hepe01g2162 192 PRINTS DnaJ domain signature 114 129 IPR001623 -
Hepe01g2162 192 PRINTS DnaJ domain signature 96 114 IPR001623 -
Hepe01g2162 192 PRINTS DnaJ domain signature 151 170 IPR001623 -
Hepe01g2162 192 PRINTS DnaJ domain signature 131 151 IPR001623 -
Hepe01g2162 192 PANTHER CHAPERONE DNAJ-DOMAIN SUPERFAMILY PROTEIN 63 192 - GO:0005634(PANTHER)|GO:0005737(PANTHER)
Hepe01g2162 192 MobiDBLite consensus disorder prediction 55 77 - -
Hepe01g2162 192 ProSitePatterns Nt-dnaJ domain signature. 136 155 IPR018253 -
Hepe01g2162 192 FunFam Chaperone protein DNAj, putative 86 173 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe01g2162 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe01g2162 Hepe-Chr1:86265947 Hepe08g0420 Hepe-Chr8:3726017 1.49e-18 dispersed
Hepe01g2162 Hepe-Chr1:86265947 Hepe10g0410 Hepe-Chr10:4568638 2.02e-59 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g487 . . . . . . . . . Cmo12g00144 Cma01g01638 . . Car12g00169 . . Cpe07g00157 . . . . . . . . . . . . . . . . . . Lsi04g02272 Csa03g04483 Chy04g00217 . . . . . . . . Bma02g00106 Sed13g1547 Cmo01g01685 . Cma12g00186 . . . . . Bhi09g02487 Tan01g3840 Cmetu04g2532 . Hepe01g2162 Mch11g0701 . Cla11g01415 Cam11g1472 Cec11g1502 Cco11g1497 Clacu11g1633 Cmu11g1451 Cre11g1869 . . . Cme04g00245
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002065 3 2 1 1 2 1 3 2 2 2 2 1 3 2 1 3 1 4 3 1 2 2 2 2 2 2 2 4 2 2 62