Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe01g2164 ATGGCTTGTAAGTTCCTGTTTCTGATACTTTTAGTTTTAACCCTTTTCTTCAGCTCTTCATCTACTGCAGATGATTCTCTCACTAATTCTTTCCCTACAAAAGCCATTTGCAAATTCACCTCAAATCCTTCTTACTGCATCTCTGTTCTTCAAAAATCCCCAGGCAATGTCTATGACTCGGGTCGGTTTTCAATCCGTCGTTCTTTATCTAAAGCATCTAGATTCTTTGACTTGATTGATAAGCATCTTCAAAACAGTTCCACTCTACCTAAATCTGTCACTGGAGCTCTTACAGATTGCCAGTATCTTGCCCAACTAAACATCAATTTCTTGTCGAATTCATTTCGAGCCGTCAATGGAACCGATAAAAAGCTAACTTACTCAAAAGCTGATTATATCCAAAGTCTTCTTAGTGCCATCTTAACCAACATTGATACTTGTCTTGATGGCCTAAAAACTGTAGCCTCAGGTTCTAGTTTGGAGAAAGATATCTTGGCCCCTCTCATTGACTGTACCAAATCATACAGTCTTTCTCTTGATCTTTTTACAAGGAGTTGGGTGCCTAGGAATAGAAACAGGACACTCGAGCACCCTGGGAAAAAACACCTCCGGTTTAGGAAAGGACCGTTGCCGTTGAGAATGTCGAGACACGACCGTGCCGTTTACGATCGTTACCGTTCGACGGTGAATCGAAGAAGGCTTTCGTCTTCATCAGATGATGGAGTTTTGGTTAATGACATTGTGGTTGTGAGTCAAGATGGCCTAGGAAACTTCCTCACCATCTCAGAAGCTATTGGTGCTGCTCCCAACAACTCTCTTGCTGCCAATGGCTACTTCTTGATTTACATCACGGCTGGTGTTTATCAAGAGTATGTGTCGATCCCTACGAAGAAGAAGTACTTGCTGATGATTGGAGATGGTATAAATCAGACTATTATTACGGGTAACCGAAGCGTCGTAGACGGGTGGACGACTTTCAATAGTGCAACTTTTGCTGTTGCAGCAGAAGGATTCATGGCAGTGAACATAACCTTCCAAAACACAGCCGGAGCGATCAAGGGCCAAGCAGTTGCAGTAAGAAGCGGGGCCGACATGTCAATCTTCTACAGCTGCAGCTTTGAGGGCTACCAAGACACCTTATACACACACTCCCTTAGACAATTCTTTAGAGAATGTGACATCTATGGCACAGTGGACTTCATATTTGGAAATGCAGCCGTTGTGTTCCAAAACTGCAACATATATCCCCGTCTACCGCTCGCAGGACAGTCCAATATGATCACGGCTCAAGGTCGATCAGACCCGAACCAAAACACCGGGACTTCGATCCACAACTGCACGATCCGGGCCACGAGCGATTTGGCTGCAAGCAAAAGTTATATGAACAAGACATATTTGGGAAGGCCATGGAAGCAATATTCAAGAACAATGTATATGCAGACATTCATAGATGGGTTTATAAATCCTTCTGGTTGGGATCCATGGTCAAGTGAATATCTAAGCACATTATATTATGCAGAGTATAATAATACAGGAGGTGGATCAAATACAAAGAACAGAGTTAACTGGCCTGGTTACCATGTGGTTAATAATGTAACAGATGCTGCTAATTTTACGGTTTCAAATTTCCTTCTTGGGGATGTGTGGTTACCTTCAACTGCAGTGCCTTACACTGGAGGATTCATATAA 1689 42.87 MACKFLFLILLVLTLFFSSSSTADDSLTNSFPTKAICKFTSNPSYCISVLQKSPGNVYDSGRFSIRRSLSKASRFFDLIDKHLQNSSTLPKSVTGALTDCQYLAQLNINFLSNSFRAVNGTDKKLTYSKADYIQSLLSAILTNIDTCLDGLKTVASGSSLEKDILAPLIDCTKSYSLSLDLFTRSWVPRNRNRTLEHPGKKHLRFRKGPLPLRMSRHDRAVYDRYRSTVNRRRLSSSSDDGVLVNDIVVVSQDGLGNFLTISEAIGAAPNNSLAANGYFLIYITAGVYQEYVSIPTKKKYLLMIGDGINQTIITGNRSVVDGWTTFNSATFAVAAEGFMAVNITFQNTAGAIKGQAVAVRSGADMSIFYSCSFEGYQDTLYTHSLRQFFRECDIYGTVDFIFGNAAVVFQNCNIYPRLPLAGQSNMITAQGRSDPNQNTGTSIHNCTIRATSDLAASKSYMNKTYLGRPWKQYSRTMYMQTFIDGFINPSGWDPWSSEYLSTLYYAEYNNTGGGSNTKNRVNWPGYHVVNNVTDAANFTVSNFLLGDVWLPSTAVPYTGGFI 562
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 86291753 86298658 - Hsped.01g21640.1 Hepe01g2164 561274
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe01g2164 562 NCBIfam pectinesterase inhibitor domain 6 155 IPR006501 GO:0004857(InterPro)
Hepe01g2164 562 Pfam Plant invertase/pectin methylesterase inhibitor 34 181 IPR006501 GO:0004857(InterPro)
Hepe01g2164 562 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 34 183 IPR035513 -
Hepe01g2164 562 SUPERFAMILY Pectin lyase-like 245 559 IPR011050 -
Hepe01g2164 562 Gene3D - 242 561 IPR012334 -
Hepe01g2164 562 Gene3D Invertase/pectin methylesterase inhibitor family protein 33 184 IPR035513 -
Hepe01g2164 562 SMART PMEI_2 28 181 IPR006501 GO:0004857(InterPro)
Hepe01g2164 562 CDD PMEI-like_3 35 184 - -
Hepe01g2164 562 FunFam Pectinesterase 242 561 - -
Hepe01g2164 562 ProSitePatterns Pectinesterase signature 2. 394 403 IPR033131 -
Hepe01g2164 562 PANTHER PECTINESTERASE 7 552 - GO:0030599(PANTHER)|GO:0046910(PANTHER)
Hepe01g2164 562 Pfam Pectinesterase 248 547 IPR000070 GO:0030599(InterPro)|GO:0042545(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe01g2164 Hepe-Chr1:86291753 Hepe10g0809 Hepe-Chr10:16410601 2.92e-191 dispersed
Hepe01g2164 Hepe-Chr1:86291753 Hepe03g1874 Hepe-Chr3:75735245 2.90e-227 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe01g2164 K01051 - csv:101205879 969.918