Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Hepe01g2180 | ATGGCGAACGAGATACTCCAATTGGATATTCAGGATCATCATGTAGTTATGGACAATGGTATATTGCAAGTGACACTGTCCAAGCCAGATGGAAATGTTACTGGGATAAAATACAACAGCATTGACAATGTTTTAGAAGTTGATGATAAAGAAGCTCACAGAGGGTACTGGGACCTTGTGTGGAACTCCGGGACTTCCGGAACGACGGGAACCTTCGATGAGATGAGAGGAAAAGAATTTGAAGTGATGGTGCAAAATGAAGAACAGATAGAGCTCTCATTTAAAAGGAATTATGCATTTAAGGACAAGGAAGTTCCCTTAAACATAGACAAAAGGTTCATAATGCTTCGTAACTCCTCTGGATTTTACTCCTATGCCATCTATGAACACTTGAAGGAATGGCCTCCATTCAACCTTCCTCAAACTAGGATTGTATTTAAGCTAAGAAAAGACAAGTTTCATTATATGGCGATAGCAGATAACAGACAGAGATTTATGCCACTTCCTGAGGATAGATTACGTCACAGAGGCAAACCTTTGGACTTTCCAGAGGCTGTATTGTTAGTCAATCCTAAAGAAGCTGAGTTCAAGGGAGAGGTGGATGATAAATACCAATATTCTTGTGAAAATAAAGATCTTAAAGTGCATGGATGGATATCCATGGATCCTCCAGTTGGTTTCTGGCAAATCACTCCCAGCAGTGAGTTCAGATCAGGTGGACCCCTCAAGCAGAATCTTACCTCTCATGTGGGCCCATATGCTCTTGCTATGTTTCTTAGCGCTCACTATTCAGGAGAGGACTTGGTGCTGAAGATCATTCCTGATGAGCCGTGGAAGAAAGTTTTTGGCCCTGTTTTTCTCTATGTAAATTCTGTTCCTGATGGAGGTGATCCACTTTCTTTGTGGGTAGATGCTAAAACTCAGATGACGAAAGAAGTTGAAAGTTGGCCCTATTCTTTTCCCGCTTCTGAGGATTTCCCCACACCAAACCAACGTGGTAGATTGACTGGCAAATTGTTTGTCCTTGACAGATATGTTAACAAAGAGCAAATGCCAGCAACTGATGCGTATGTGGGACTGGCAGCACCAGGAGATGCTGGATCATGGCAGACAGAAAACAAGGGTTACCAGTTTTGGACCAAAACAGATGCAGATGGCTCATTTAGCATTGAAAATATACGTATCGGCGACTACAATCTTTATGCTTGGGTTCGTGGTTTCATTGGTGATTACCGATATGAAGTTGTCTTCTGTTCATGTCGAATTTCAGGTAGTGATATGGAGGTGGGTGATCTTGTTTATGAGCCGCTTAGGAATGGGCCCACATTGTGGGAAATAGGCATTCCTGATCGCTCTGCTGCCGAATTCTATGTTCCTGATCCTGATCCAAAGTACATTAACAAATTGTATGTTAATCATCCGGATAGATTTAGGCAATATGGATTGTGGGAAAAATATGCAGAATTATATCCTGATGCAGACTTAGTATACACAGTTGGTGTCAGTGATTACACAAAAGATTGGTTCTTTGCTCATGTTAATAGAACGAGAAATAATGGATCCCATCAAGCAACCACGTGGGAAATCAAGTTTACACTGAATAATCAAATAGATAAGAATGGAACCTATACATTGCGAGTGGCTCTCGCTACTGCCAATGTTGCTGAATTACAGATCCAGGTAAACAATCCAGAAGCAAAGCCTGCTGTATTTACAACAGGACAGATTGGGCACGACAATGCAATAGCTAGGCATGGAATTCATGGACTCTATCGACTCTACAGTGTTGACATACCTGGATCTTTACTGCTGGAAGGAGACAACAGCATCTTCCTTTCGCAAATTATAAGCAGTTCATCTTTCAATGGCGTCATGTATGATTATATCCGTCTCGAAGGCCCCCCATCTGATGCCCCTACAGATTCATAA | 1929 | 41.78 | MANEILQLDIQDHHVVMDNGILQVTLSKPDGNVTGIKYNSIDNVLEVDDKEAHRGYWDLVWNSGTSGTTGTFDEMRGKEFEVMVQNEEQIELSFKRNYAFKDKEVPLNIDKRFIMLRNSSGFYSYAIYEHLKEWPPFNLPQTRIVFKLRKDKFHYMAIADNRQRFMPLPEDRLRHRGKPLDFPEAVLLVNPKEAEFKGEVDDKYQYSCENKDLKVHGWISMDPPVGFWQITPSSEFRSGGPLKQNLTSHVGPYALAMFLSAHYSGEDLVLKIIPDEPWKKVFGPVFLYVNSVPDGGDPLSLWVDAKTQMTKEVESWPYSFPASEDFPTPNQRGRLTGKLFVLDRYVNKEQMPATDAYVGLAAPGDAGSWQTENKGYQFWTKTDADGSFSIENIRIGDYNLYAWVRGFIGDYRYEVVFCSCRISGSDMEVGDLVYEPLRNGPTLWEIGIPDRSAAEFYVPDPDPKYINKLYVNHPDRFRQYGLWEKYAELYPDADLVYTVGVSDYTKDWFFAHVNRTRNNGSHQATTWEIKFTLNNQIDKNGTYTLRVALATANVAELQIQVNNPEAKPAVFTTGQIGHDNAIARHGIHGLYRLYSVDIPGSLLLEGDNSIFLSQIISSSSFNGVMYDYIRLEGPPSDAPTDS | 642 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 86473331 | 86480111 | - | Hsped.01g21800.1 | Hepe01g2180 | 561290 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Hepe01g2180 | 642 | Pfam | Rhamnogalacturonate lyase family | 3 | 200 | IPR010325 | - | |
Hepe01g2180 | 642 | FunFam | Rhamnogalacturonate lyase B | 328 | 428 | - | - | |
Hepe01g2180 | 642 | CDD | RGL4_M | 331 | 411 | IPR029413 | - | |
Hepe01g2180 | 642 | CDD | RGL4_C | 444 | 632 | - | - | |
Hepe01g2180 | 642 | Gene3D | - | 329 | 415 | - | - | |
Hepe01g2180 | 642 | Gene3D | - | 440 | 632 | - | - | |
Hepe01g2180 | 642 | Pfam | Polysaccharide lyase family 4, domain II | 355 | 412 | IPR029413 | - | |
Hepe01g2180 | 642 | CDD | RGL4_N | 14 | 301 | - | - | |
Hepe01g2180 | 642 | Gene3D | - | 7 | 271 | IPR014718 | GO:0030246(InterPro) | |
Hepe01g2180 | 642 | SUPERFAMILY | Galactose-binding domain-like | 439 | 632 | IPR008979 | - | |
Hepe01g2180 | 642 | SUPERFAMILY | Galactose mutarotase-like | 12 | 289 | IPR011013 | GO:0003824(InterPro)|GO:0005975(InterPro)|GO:0030246(InterPro) | |
Hepe01g2180 | 642 | PANTHER | RHAMNOGALACTURONATE LYASE FAMILY PROTEIN | 2 | 635 | IPR051850 | - | |
Hepe01g2180 | 642 | Pfam | Polysaccharide lyase family 4, domain III | 442 | 631 | IPR029411 | - | |
Hepe01g2180 | 642 | SUPERFAMILY | Starch-binding domain-like | 330 | 411 | IPR013784 | GO:0030246(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Hepe01g2180 | Hepe-Chr1:86473331 | Hepe01g2182 | Hepe-Chr1:86495821 | 1.01e-281 | dispersed | |
Hepe01g2180 | Hepe-Chr1:86473331 | Hepe01g2181 | Hepe-Chr1:86481175 | 1.46e-317 | tandem | |
Hepe01g2180 | Hepe-Chr1:86473331 | Hepe10g0445 | Hepe-Chr10:5032406 | 7.57e-315 | wgd | |
Hepe01g2180 | Hepe-Chr1:86473331 | Hepe04g1385 | Hepe-Chr4:69514034 | 1.65e-247 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Hepe01g2180 | K18195 | - | csv:101204193 | 1211.82 |