Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe01g2180 ATGGCGAACGAGATACTCCAATTGGATATTCAGGATCATCATGTAGTTATGGACAATGGTATATTGCAAGTGACACTGTCCAAGCCAGATGGAAATGTTACTGGGATAAAATACAACAGCATTGACAATGTTTTAGAAGTTGATGATAAAGAAGCTCACAGAGGGTACTGGGACCTTGTGTGGAACTCCGGGACTTCCGGAACGACGGGAACCTTCGATGAGATGAGAGGAAAAGAATTTGAAGTGATGGTGCAAAATGAAGAACAGATAGAGCTCTCATTTAAAAGGAATTATGCATTTAAGGACAAGGAAGTTCCCTTAAACATAGACAAAAGGTTCATAATGCTTCGTAACTCCTCTGGATTTTACTCCTATGCCATCTATGAACACTTGAAGGAATGGCCTCCATTCAACCTTCCTCAAACTAGGATTGTATTTAAGCTAAGAAAAGACAAGTTTCATTATATGGCGATAGCAGATAACAGACAGAGATTTATGCCACTTCCTGAGGATAGATTACGTCACAGAGGCAAACCTTTGGACTTTCCAGAGGCTGTATTGTTAGTCAATCCTAAAGAAGCTGAGTTCAAGGGAGAGGTGGATGATAAATACCAATATTCTTGTGAAAATAAAGATCTTAAAGTGCATGGATGGATATCCATGGATCCTCCAGTTGGTTTCTGGCAAATCACTCCCAGCAGTGAGTTCAGATCAGGTGGACCCCTCAAGCAGAATCTTACCTCTCATGTGGGCCCATATGCTCTTGCTATGTTTCTTAGCGCTCACTATTCAGGAGAGGACTTGGTGCTGAAGATCATTCCTGATGAGCCGTGGAAGAAAGTTTTTGGCCCTGTTTTTCTCTATGTAAATTCTGTTCCTGATGGAGGTGATCCACTTTCTTTGTGGGTAGATGCTAAAACTCAGATGACGAAAGAAGTTGAAAGTTGGCCCTATTCTTTTCCCGCTTCTGAGGATTTCCCCACACCAAACCAACGTGGTAGATTGACTGGCAAATTGTTTGTCCTTGACAGATATGTTAACAAAGAGCAAATGCCAGCAACTGATGCGTATGTGGGACTGGCAGCACCAGGAGATGCTGGATCATGGCAGACAGAAAACAAGGGTTACCAGTTTTGGACCAAAACAGATGCAGATGGCTCATTTAGCATTGAAAATATACGTATCGGCGACTACAATCTTTATGCTTGGGTTCGTGGTTTCATTGGTGATTACCGATATGAAGTTGTCTTCTGTTCATGTCGAATTTCAGGTAGTGATATGGAGGTGGGTGATCTTGTTTATGAGCCGCTTAGGAATGGGCCCACATTGTGGGAAATAGGCATTCCTGATCGCTCTGCTGCCGAATTCTATGTTCCTGATCCTGATCCAAAGTACATTAACAAATTGTATGTTAATCATCCGGATAGATTTAGGCAATATGGATTGTGGGAAAAATATGCAGAATTATATCCTGATGCAGACTTAGTATACACAGTTGGTGTCAGTGATTACACAAAAGATTGGTTCTTTGCTCATGTTAATAGAACGAGAAATAATGGATCCCATCAAGCAACCACGTGGGAAATCAAGTTTACACTGAATAATCAAATAGATAAGAATGGAACCTATACATTGCGAGTGGCTCTCGCTACTGCCAATGTTGCTGAATTACAGATCCAGGTAAACAATCCAGAAGCAAAGCCTGCTGTATTTACAACAGGACAGATTGGGCACGACAATGCAATAGCTAGGCATGGAATTCATGGACTCTATCGACTCTACAGTGTTGACATACCTGGATCTTTACTGCTGGAAGGAGACAACAGCATCTTCCTTTCGCAAATTATAAGCAGTTCATCTTTCAATGGCGTCATGTATGATTATATCCGTCTCGAAGGCCCCCCATCTGATGCCCCTACAGATTCATAA 1929 41.78 MANEILQLDIQDHHVVMDNGILQVTLSKPDGNVTGIKYNSIDNVLEVDDKEAHRGYWDLVWNSGTSGTTGTFDEMRGKEFEVMVQNEEQIELSFKRNYAFKDKEVPLNIDKRFIMLRNSSGFYSYAIYEHLKEWPPFNLPQTRIVFKLRKDKFHYMAIADNRQRFMPLPEDRLRHRGKPLDFPEAVLLVNPKEAEFKGEVDDKYQYSCENKDLKVHGWISMDPPVGFWQITPSSEFRSGGPLKQNLTSHVGPYALAMFLSAHYSGEDLVLKIIPDEPWKKVFGPVFLYVNSVPDGGDPLSLWVDAKTQMTKEVESWPYSFPASEDFPTPNQRGRLTGKLFVLDRYVNKEQMPATDAYVGLAAPGDAGSWQTENKGYQFWTKTDADGSFSIENIRIGDYNLYAWVRGFIGDYRYEVVFCSCRISGSDMEVGDLVYEPLRNGPTLWEIGIPDRSAAEFYVPDPDPKYINKLYVNHPDRFRQYGLWEKYAELYPDADLVYTVGVSDYTKDWFFAHVNRTRNNGSHQATTWEIKFTLNNQIDKNGTYTLRVALATANVAELQIQVNNPEAKPAVFTTGQIGHDNAIARHGIHGLYRLYSVDIPGSLLLEGDNSIFLSQIISSSSFNGVMYDYIRLEGPPSDAPTDS 642
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 86473331 86480111 - Hsped.01g21800.1 Hepe01g2180 561290
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe01g2180 642 Pfam Rhamnogalacturonate lyase family 3 200 IPR010325 -
Hepe01g2180 642 FunFam Rhamnogalacturonate lyase B 328 428 - -
Hepe01g2180 642 CDD RGL4_M 331 411 IPR029413 -
Hepe01g2180 642 CDD RGL4_C 444 632 - -
Hepe01g2180 642 Gene3D - 329 415 - -
Hepe01g2180 642 Gene3D - 440 632 - -
Hepe01g2180 642 Pfam Polysaccharide lyase family 4, domain II 355 412 IPR029413 -
Hepe01g2180 642 CDD RGL4_N 14 301 - -
Hepe01g2180 642 Gene3D - 7 271 IPR014718 GO:0030246(InterPro)
Hepe01g2180 642 SUPERFAMILY Galactose-binding domain-like 439 632 IPR008979 -
Hepe01g2180 642 SUPERFAMILY Galactose mutarotase-like 12 289 IPR011013 GO:0003824(InterPro)|GO:0005975(InterPro)|GO:0030246(InterPro)
Hepe01g2180 642 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 2 635 IPR051850 -
Hepe01g2180 642 Pfam Polysaccharide lyase family 4, domain III 442 631 IPR029411 -
Hepe01g2180 642 SUPERFAMILY Starch-binding domain-like 330 411 IPR013784 GO:0030246(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe01g2180 Hepe-Chr1:86473331 Hepe01g2182 Hepe-Chr1:86495821 1.01e-281 dispersed
Hepe01g2180 Hepe-Chr1:86473331 Hepe01g2181 Hepe-Chr1:86481175 1.46e-317 tandem
Hepe01g2180 Hepe-Chr1:86473331 Hepe10g0445 Hepe-Chr10:5032406 7.57e-315 wgd
Hepe01g2180 Hepe-Chr1:86473331 Hepe04g1385 Hepe-Chr4:69514034 1.65e-247 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe01g2180 K18195 - csv:101204193 1211.82