Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe01g2181 ATGACCCCCGCCGATGGACACGGCCCCGACGCCTCGGCCGCACCTCCGCTGCAACTCCACATTCACGACCAACATGTTGTGATGGACAATGGCATAATTGGAGTCACGTTGTCGAATCCAAAGGGAATGGTCACCGGAATACAATACAAGGGGATTGAAAACTTGCTTGAGGTCGACAACGGTGAAGATAATAGAGGATATTGGGACATTGTTTGGAATGTCGCGGGAAGTTCAGGAACAAAGGGCTTTTTTGATCGAATTGAAGCAACGGATTTCAAGGTAATTGTAGAAAATGACGAACAAATCGAACTTTCATTCAGCAGAACCTACAATCCATCTTCATCCATCGGAAGCGACCAAATTCCCTTAAACATCGACAAAAGATTCGTGATGCTCCGGAATTCATCAGGATTCTATTCTTACGCCATTTACGAACACTTGAAAGAATGGCCGGCGTTTATCATCGACAACACCAGAATCGTATTCAAGCCTCGAAAAGACAAGTTTGGATACATGGCTGTAGCAGATAAGAGACAGAGATTCATGCCTTCGCCGGAGGATAGGAAGCCGCCGCGAGGGGAAGCCCTAGCTTATCCAGAGGCCGTCCTCCTTGTGGATCCTGTAGAGCCTGAGTTCAAGGGAGAGGTTGATGACAAGTACCAATACGGGTGCGAAAGCAAAGACGGTCAGGTTCACGGGTGGATATCCACCTCCGACCCGCCCATTGGCATTTGGCAAATCGCACCCAGCGACGAGTTTCGGTCCGGTGGGCCCCTGAAGCAAATTCTAACATCCCACGTCGGTCCCACCACCCTGACAGTTTTTCATAGCGCTCATTATGCAGGAGAGGATATGGTGATAAAGTTCGGAAGTAATGAGCCATGGAAGAAGGTTTTCGGTCCTATCTTTATCCATCTCAATTCCTTGCCTCAAGGACAAGATCCCCTTACACTTTGGCAAAATGCTAAACAACAGATGATGGCTGAAGTTCAAAGCTGGCCTTACAGTTTTCCTGCTTCTGAGGATTTTCTCAAATCCGATCGACGAGGCACTGTCACCGGCAGATTGTTCATCCGGGACAGATATGTGAGTGATGAATCTATGCCTGCAAATGGTGCATATGTGGGATTGGCACTTCCCGGAGAACTTGGCTCTTGGCAAACAGAAAGTAAGGGCTACCAATTCTGGACTAGAGCAGATAAGAATGGATATTTCTCTTTGAATAATGTTCAGAGTGGAAATTATAATCTTTATGGATGGGTCCCTAATGTTATTGGCAATTACCAATACGATGCTTTCATTACCGTAACCCCAGGCAGTGATATCAATTTGGGTGAACTTGTTTTTGAGCCCCCAAGAGATGGTCCTACATTATGGGAAATAGGCATTCCCGATCGTACTGCTGCAGAATTCTATGTACCGGATCCTAATCCAAAGTATATCAATAAACTTTATGTTAATCATACAGATAGGTTTAGGCAGTATGGATTATGGGAAAGATACACAGAATTATATCCTGAAGAGGATCTAGTTTATACAGTCGGCCTTAGTGACTACAGAAAAGATTGGTTCTTTGCACAAGTTACCAGGAAGATAGGGGACAAGAAATATGCAGGAACTACTTGGAAAATTAAGTTCCAACTTGACAGTCCAGATACGCGTGGAACATATAGTCTGCGTCTTGCATTGGCAACAGCACAGGCTGCAGAATTACAAGTTCGACTGAATGATGCACAAACACTTCCCCCATTATTCAGTACTGGATTGATTGGAAAGGACAATACTATAGCTAGACATGGAATTCATGGTCTCTATCGGCTGTACACGGTTGATATTCCGGGCTCCGAGCTTGTGATCGGCAACAATACAATTCTTCTTGCACAAACAAGTAGCAACAGTCCTTTTGTGGGGATTATGTATGATTATCTTCGTTTAGAAGGACCCTCAACTTCCAAAATCTTCTCCTCCAAGGGTTCTCGTGTTGATGGTTCTTCCCCAAGGCTCTCTCTGCTGGTTTGGCTTTATGTTGGGGGGTTTGGGCTCTTGTTTTTAGTTTAG 2058 45.19 MTPADGHGPDASAAPPLQLHIHDQHVVMDNGIIGVTLSNPKGMVTGIQYKGIENLLEVDNGEDNRGYWDIVWNVAGSSGTKGFFDRIEATDFKVIVENDEQIELSFSRTYNPSSSIGSDQIPLNIDKRFVMLRNSSGFYSYAIYEHLKEWPAFIIDNTRIVFKPRKDKFGYMAVADKRQRFMPSPEDRKPPRGEALAYPEAVLLVDPVEPEFKGEVDDKYQYGCESKDGQVHGWISTSDPPIGIWQIAPSDEFRSGGPLKQILTSHVGPTTLTVFHSAHYAGEDMVIKFGSNEPWKKVFGPIFIHLNSLPQGQDPLTLWQNAKQQMMAEVQSWPYSFPASEDFLKSDRRGTVTGRLFIRDRYVSDESMPANGAYVGLALPGELGSWQTESKGYQFWTRADKNGYFSLNNVQSGNYNLYGWVPNVIGNYQYDAFITVTPGSDINLGELVFEPPRDGPTLWEIGIPDRTAAEFYVPDPNPKYINKLYVNHTDRFRQYGLWERYTELYPEEDLVYTVGLSDYRKDWFFAQVTRKIGDKKYAGTTWKIKFQLDSPDTRGTYSLRLALATAQAAELQVRLNDAQTLPPLFSTGLIGKDNTIARHGIHGLYRLYTVDIPGSELVIGNNTILLAQTSSNSPFVGIMYDYLRLEGPSTSKIFSSKGSRVDGSSPRLSLLVWLYVGGFGLLFLV 685
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 86481175 86489868 - Hsped.01g21810.1 Hepe01g2181 561291
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe01g2181 685 CDD RGL4_C 459 646 - -
Hepe01g2181 685 Pfam Polysaccharide lyase family 4, domain II 371 444 IPR029413 -
Hepe01g2181 685 Coils Coil 561 581 - -
Hepe01g2181 685 CDD RGL4_N 22 308 - -
Hepe01g2181 685 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 12 649 IPR051850 -
Hepe01g2181 685 Gene3D - 345 444 - -
Hepe01g2181 685 Pfam Rhamnogalacturonate lyase family 15 216 IPR010325 -
Hepe01g2181 685 Gene3D - 18 300 IPR014718 GO:0030246(InterPro)
Hepe01g2181 685 SUPERFAMILY Galactose-binding domain-like 454 646 IPR008979 -
Hepe01g2181 685 SUPERFAMILY Starch-binding domain-like 346 445 IPR013784 GO:0030246(InterPro)
Hepe01g2181 685 Gene3D - 455 646 - -
Hepe01g2181 685 Pfam Polysaccharide lyase family 4, domain III 457 645 IPR029411 -
Hepe01g2181 685 FunFam Rhamnogalacturonate lyase B 345 444 - -
Hepe01g2181 685 CDD RGL4_M 348 447 IPR029413 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe01g2181 Hepe-Chr1:86481175 Hepe10g0445 Hepe-Chr10:5032406 8.47e-311 dispersed
Hepe01g2180 Hepe-Chr1:86473331 Hepe01g2181 Hepe-Chr1:86481175 1.46e-317 tandem
Hepe01g2181 Hepe-Chr1:86481175 Hepe01g2182 Hepe-Chr1:86495821 2.71e-278 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe01g2181 K18195 - csv:101203789 1143.26