Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe01g2182 ATGTGGGATCCCTCCCTCGAGGGAAAATTTGTTCCTTTGAATATAGACAAAAGGTTCATAGTGCTACGCGGTTCCTCTGGATTCTACTCTTATGCTATTTATGAGCACTTGAAGGATTGGCCTGATTTTGATATTGGTGAAACCAGGATCACCTTTAAACTCAGAAAAGACAAGTTTCAGTACATGGCTGTAGCCGACAACAGGCAGAGATTGATGCCACTGCCCGATGATCGGTTATTTGGAAAATGCCAAACTTTGGCCTACCCTGAAGCTGTCCTGCTTACCAATCCTAAGAACCCTCAACTCAAGGGTGAGGTGGATGACAAGTACCAATACTCGTGTGAAAACAAGGACTTAAAGGTCCATGGATGGATAAGCTCCAACCCGCCCATCGGGTTTTGGCAGATTACACCCAGTGATGAATTTCGGTCAGGCGGGCCCCACAAGCAAAGTCTAACATCCCATGTCGGACCTACAACCCTTGCTATATTTCTTAGTACTCATTATGCGGGACAAGATTTGGTGCCAAAATTTAGAGCGGGTGAGCCATGGAAGAAAGTTTTTGGCCCTGTTTTTATTTATCTTAATTCCACCTCACCTGGAGATGATCCATTTTGGTTATGGGAGGATGCTAAAATACAGATGATGACAGAAGTCCAAAGTTGGCCGTATAGTTTCCCTGCGTCTGAGGATTTCCCGAAAGTGGATCAACGGGGTACTGTTAGTGGTAGGCTTCTGGTTTTTGACAGGTATATGAGTCGAGACTATCTTCCAGCCAGTGGAGCCTTCGTCGGATTGTCTGCACCAGGAGAAGTAGGGTCATGGCAGAGAGAATGCAAGGGATATCAATTCTGGACTAGAGCAGATGATGGTGGTTATTTTACCATCAACCACATACACACTGGCGATTATAATCTATATGCATGGGTCCCTGGCTTCATTGGAGATTACCGTTGTGATGCCCTCATCAACGTAAACGAAGGATCTTGCATTGTAATGGGCGATTGTGTATATGAACCTCCAAGAGATGGGCCTACACTATGGGAAATAGGCATTCCCGATCGCTCCGCATCTGAGTTCTATGTTCCTGATCCTAACCCAATGCATATTAATAAGCTCTTTGTCAACCATCCTGACAGGTTCCGGCAGTACGGTTTGTGGGATAAATATGCTGAATTATACCCGGACGAGGATTTAGTATACACGGTTGGCACAAGTGATTATAGAAAAGATTGGTTCTTTGCTCAGGTCCCTAGGAAAACAAACAATAATCCACATCAAGAAACTACTTGGCAAATCAAATTCAATCTCAACGGAGTGGATCAAAAGAGTTCGTATACGCTACGAGTCGCAATTGCATCTGCAACTCTTGCTGAAATGCAGGTCCGGGTTAATGATCCGAGATCGAATCGACCTTTGTTTACAAGTGGGTTGATAGGGAGAGACAACTCAATTGCAAGACATGGAATTCATGGAATTTATTGGCTTTACAACGTGCGTGTAGCAGGCTCTAATCTTGTTGAAGGGGAAAACACAATCTTCTTGACTCAGCCACGCTGCACCAGCCCTTTCCAGGGTATCATGTATGATTATATCCGTCTTGAAGGTCCTCCAACAAAGTGA 1623 44.61 MWDPSLEGKFVPLNIDKRFIVLRGSSGFYSYAIYEHLKDWPDFDIGETRITFKLRKDKFQYMAVADNRQRLMPLPDDRLFGKCQTLAYPEAVLLTNPKNPQLKGEVDDKYQYSCENKDLKVHGWISSNPPIGFWQITPSDEFRSGGPHKQSLTSHVGPTTLAIFLSTHYAGQDLVPKFRAGEPWKKVFGPVFIYLNSTSPGDDPFWLWEDAKIQMMTEVQSWPYSFPASEDFPKVDQRGTVSGRLLVFDRYMSRDYLPASGAFVGLSAPGEVGSWQRECKGYQFWTRADDGGYFTINHIHTGDYNLYAWVPGFIGDYRCDALINVNEGSCIVMGDCVYEPPRDGPTLWEIGIPDRSASEFYVPDPNPMHINKLFVNHPDRFRQYGLWDKYAELYPDEDLVYTVGTSDYRKDWFFAQVPRKTNNNPHQETTWQIKFNLNGVDQKSSYTLRVAIASATLAEMQVRVNDPRSNRPLFTSGLIGRDNSIARHGIHGIYWLYNVRVAGSNLVEGENTIFLTQPRCTSPFQGIMYDYIRLEGPPTK 540
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 86495821 86502251 - Hsped.01g21820.1 Hepe01g2182 561292
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe01g2182 540 SUPERFAMILY Galactose-binding domain-like 343 535 IPR008979 -
Hepe01g2182 540 FunFam Rhamnogalacturonate lyase B 234 333 - -
Hepe01g2182 540 CDD RGL4_M 237 335 IPR029413 -
Hepe01g2182 540 Pfam Polysaccharide lyase family 4, domain II 260 330 IPR029413 -
Hepe01g2182 540 Pfam Rhamnogalacturonate lyase family 2 106 IPR010325 -
Hepe01g2182 540 Gene3D - 344 535 - -
Hepe01g2182 540 SUPERFAMILY Galactose mutarotase-like 34 200 IPR011013 GO:0003824(InterPro)|GO:0005975(InterPro)|GO:0030246(InterPro)
Hepe01g2182 540 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 1 538 IPR051850 -
Hepe01g2182 540 SUPERFAMILY Starch-binding domain-like 235 329 IPR013784 GO:0030246(InterPro)
Hepe01g2182 540 Pfam Polysaccharide lyase family 4, domain III 346 534 IPR029411 -
Hepe01g2182 540 Gene3D - 235 329 - -
Hepe01g2182 540 CDD RGL4_C 348 535 - -
Hepe01g2182 540 CDD RGL4_N 12 199 - -
Hepe01g2182 540 Gene3D - 9 211 IPR014718 GO:0030246(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe01g2180 Hepe-Chr1:86473331 Hepe01g2182 Hepe-Chr1:86495821 1.01e-281 dispersed
Hepe01g2182 Hepe-Chr1:86495821 Hepe10g0445 Hepe-Chr10:5032406 4.65e-308 dispersed
Hepe01g2181 Hepe-Chr1:86481175 Hepe01g2182 Hepe-Chr1:86495821 2.71e-278 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe01g2182 K18195 - csv:101203947 1053.12