Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe01g2184 ATGGGGAGAGGGAAGATCGTAATTAGGAGGATCGACAATTCGACGAGCAGACAGGTAACTTTCTCGAAGCGTAGGAGCGGATTACTGAAGAAGGCGAAAGAATTGGCGATCCTTTGTGACGCCGATGTTGGAGTCATCATCTTCTCCAGCACCAGCAAGCTCTATGAATACTCCAGCACCAGCATGAGAGCACTAATAGACCGATATAACAAAACTAAAGACGAGCACCATCAGCTTGGGGTCTCGACTTCTGAAGTCAAGTACTGGCAAAGGGAAGCAGCAATGTTACAGCAGCAGCTGCAGAGCTTACATGAAAATCATCGCCAGATGATGGGTGAAGAGTTGACTGGTCTGAGCGTCAAAGATCTACAGAACCTAGAAAATCAACTGGAGATAAGTCTCCGTGGTGTCCGTATGAAAAAGGATCAAATCTTAATGGATGAGATACAAGACCTAAATAGAAAGGGAAACCTAATTCACCAGGACAATACGGAACTTTATAAGAAGGTAAACCTAATTCGTCAAGAAAACATGGAATTATACGAAAAGGTCTATGGAACAAAGGATGCCAATGGAGCACACATAAGCAGTCTTACAAACGGACTTGGAGTTGGAGAGGATGCAAGCATACCTATCAACCTTCAACTCAGCCAGCCACAGCAACAAGACCATGAGACACCGGAAAGAGCTACAAAACTGGGGTACAATTGCGACAAAATTCATAAATGTTCAATAATGAATACAAATGAACTTTTCCAGAGTCACTATTCCAATCTTGTTCTTTTGATGGTTTCAGCAGACTACAACTATGCTAGCAAAAAGAGACCTTACACCAACCAGGAAGATGTTTCTTATTTTGCATCAAGAAAACGGTGTAAGGTTGAAAATTATCTTTGA 897 42.25 MGRGKIVIRRIDNSTSRQVTFSKRRSGLLKKAKELAILCDADVGVIIFSSTSKLYEYSSTSMRALIDRYNKTKDEHHQLGVSTSEVKYWQREAAMLQQQLQSLHENHRQMMGEELTGLSVKDLQNLENQLEISLRGVRMKKDQILMDEIQDLNRKGNLIHQDNTELYKKVNLIRQENMELYEKVYGTKDANGAHISSLTNGLGVGEDASIPINLQLSQPQQQDHETPERATKLGYNCDKIHKCSIMNTNELFQSHYSNLVLLMVSADYNYASKKRPYTNQEDVSYFASRKRCKVENYL 298
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 86516586 86529854 + Hsped.01g21840.1 Hepe01g2184 561294
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe01g2184 298 Gene3D - 13 111 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Hepe01g2184 298 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Hepe01g2184 298 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Hepe01g2184 298 CDD MADS_MEF2_like 2 78 IPR033896 GO:0000977(InterPro)|GO:0045944(InterPro)
Hepe01g2184 298 SUPERFAMILY SRF-like 2 90 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Hepe01g2184 298 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Hepe01g2184 298 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Hepe01g2184 298 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Hepe01g2184 298 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Hepe01g2184 298 ProSiteProfiles K-box domain profile. 86 176 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Hepe01g2184 298 Coils Coil 86 113 - -
Hepe01g2184 298 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 217 IPR050142 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Hepe01g2184 298 SMART madsneu2 1 60 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Hepe01g2184 298 Pfam K-box region 83 170 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe01g2184 Hepe-Chr1:86516586 Hepe07g0369 Hepe-Chr7:3752332 1.36e-79 dispersed
Hepe01g2184 Hepe-Chr1:86516586 Hepe10g0423 Hepe-Chr10:4743159 1.37e-30 wgd
Hepe01g2184 Hepe-Chr1:86516586 Hepe04g1384 Hepe-Chr4:69499031 2.53e-67 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
54893 PF01486 K-box 1.90E-26 No_clan Hepe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe01g2184 K09264 - csv:101203545 422.935