Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe01g2191 ATGGAGTTTAATGAAGACTATTTGTTAGATGAAGTTTTATGTTTGAGAAGAGAGATGAATTGGGAATTAGCAATGCCCACACCTACAGAAATGAATGGCTGGAATTTTGATTCCTCTGATTCTTCTTCTGCAGCATTCTCTTTACCAATTGAACAGCAGAATCTCAATTACCTTCTCACTGGGCATGCTCAGTATTCTTTGCCCGGCGACCACTTCACGCCGCCGCCGCCGTCGAGTAGTTTTGAGGTCATTTATAATCCGATTACGGAACTTGGGATTTTGGAGGATGAGATTCATAATCTTGAAGTTCAGGCTACTTGTAAAATTGAGCCTACTGTTCATTCTCCTCAAATTATCCCAATTTTCAACACCGCCGCCACCTGCGATTTTGCCCAAAAATTCGTCAATTCGAATAAGAAACTTTCGGTTCAGGGGAAGCCGTCCAAGAATCTCATGGCGGAGAGACGGCGGAGGAAGCGCCTCAACGATCGACTCTCCATGCTCAGATCTATTGTCCCCAAAATTAGCAAGATGGATAGAACTGCGATTTTGGCGGATGCAATTGATTACGTGAAGGAATTGGTGGAGAAAATCAACAATTTACAAAGGGAAATTGAAGTGGTGAATAATCCGATTTATAAGATGGAGTCCATGGGGATTTTGAGAGACGTGAAACCAAATGAATATTTCGTCAGAAATTCTCCTAAGTTTCATGTGGAAAGGAGAGAAATGGGCAGTGGGATTGAGATTTGCTGTGCGGCTAAACCAGGATTATTGTTGTCAACAGTGCAGACTCTTGAAGATTTGGGGCTTGATATTCAGCAGTGTGTCATTAGCTGTTTTAATGACTTTGCAATTCAAGCTTCTTGCTCTGAGGGAAGGGAGCACAGAACAATTATGAGCACAGGAGAAGTAAAGCAAGCATTGTTTGAAAATGCTGGATATGGAGGAAGATGCCTCTAA 963 42.26 MEFNEDYLLDEVLCLRREMNWELAMPTPTEMNGWNFDSSDSSSAAFSLPIEQQNLNYLLTGHAQYSLPGDHFTPPPPSSSFEVIYNPITELGILEDEIHNLEVQATCKIEPTVHSPQIIPIFNTAATCDFAQKFVNSNKKLSVQGKPSKNLMAERRRRKRLNDRLSMLRSIVPKISKMDRTAILADAIDYVKELVEKINNLQREIEVVNNPIYKMESMGILRDVKPNEYFVRNSPKFHVERREMGSGIEICCAAKPGLLLSTVQTLEDLGLDIQQCVISCFNDFAIQASCSEGREHRTIMSTGEVKQALFENAGYGGRCL 320
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 86605085 86608114 + Hsped.01g21910.1 Hepe01g2191 561301
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe01g2191 320 Coils Coil 184 211 - -
Hepe01g2191 320 CDD ACT_UUR-ACR-like 248 287 - -
Hepe01g2191 320 Pfam Helix-loop-helix DNA-binding domain 152 194 IPR011598 GO:0046983(InterPro)
Hepe01g2191 320 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 138 315 IPR051358 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0043565(PANTHER)
Hepe01g2191 320 Gene3D - 138 210 IPR036638 GO:0046983(InterPro)
Hepe01g2191 320 Pfam Plant bHLH transcription factor, ACT-like domain 242 309 IPR054502 -
Hepe01g2191 320 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 148 215 IPR036638 GO:0046983(InterPro)
Hepe01g2191 320 SMART finulus 151 200 IPR011598 GO:0046983(InterPro)
Hepe01g2191 320 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 145 194 IPR011598 GO:0046983(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe01g2191 Hepe-Chr1:86605085 Hepe07g2082 Hepe-Chr7:65083710 1.01e-38 dispersed
Hepe01g2191 Hepe-Chr1:86605085 Hepe10g0404 Hepe-Chr10:4507374 5.99e-97 wgd
Hepe01g2191 Hepe-Chr1:86605085 Hepe04g1377 Hepe-Chr4:69436800 3.72e-80 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
54894 PF00010 HLH 6.00E-10 No_clan Hepe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe01g2191 - - - 0.0