Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe01g2200 ATGTCTGCTCCATTGACTCCCTCAAAGAGATCACGTGATCGGAACTCGGTCAAGCCTAATGGGAAAGGAAAGTGGCAAAAGTCATCAAGTTCTCGTTCGCAAAATCCACCCTTCAAATTGTCTCCTGGCTATGCTGTCTTTCGTATCCTCTTTCCTGCTTCCAGAATTGACAGCCTTATAGGAAGTGGTGGGGATGTTTTATCTCAAATTCGTGAAGAAACAGGCGTAGAAATCAGAGTAGAGGACACTGTCTCTGGATCTGATGAGAGAATAGTAGTCATTGGAGGTTCTAATCAAGAAACTGAAGTGAACCCTGAGCAGAATAATGAGGAAGAGAACAAAATTTCTGAAGTTGAGGAGAACAATGGTGATGTTGCCGAGTGTAGAAAGGAAGAAGATAAAGATTCTCCTCCTTTGGAGGATGCTAAACGGAAGGAGGTTCCACATTTGCAATTGCGAAAAGCCCTCTTTCTTGTTTCTGAGAAGATCTTTGACGAAGAACAGATGGATAGAACAGATGTTGAAGGTGACAAGCTTTCTACATTTGTCTTAAGATTGCTTGTTCTTTCCAGTCAAGTTGGGTGCATATTGGGAAAGGGTGGCAGCGTAGTCAAACAAATGTCATCTGATAGTGGAGCACAAATCAGGATTCTTCCCAGGGATAAACTTCCTCCCTGTGTAACATCCAGTGAGGAGTTAGTTCAGATTAGTGGAGGAATTGATGTGGTGAAGAAAGCTCTTGAACTTGTTTTTCAGCAGCTAATGGAAAATTCACCCCATGATAAAGATCCTGTTGCCTCAAGCATGACTGCACAGTCTCTCTCTAGGGCTCACGAATATCCTGTCGGTAGTAGTTCTTTTAATACTCATGGAGGCCCTTACTCTGGGCCTCGTGATGTTGGCAATTTTCATTCCAGTGCACCTTCCATTGCTCCTAAACAGTATGAAACCTGCATTTCTGGTCGAATCAAACCTTCTCATGAAATTTTAAGTTTACGTTTACTATGCCCATCTGAGAGAGTTGGAAATGTGATTGGAAAAGGAGGAGCAGTGGTTAAGATTCTTCAACAAGAGACAGGCTGTGACATCAAAGTTGTTGAAGGTGCCTTGGACTCAGAAGACCGCATTATACTTGTAGCTGGTCCTGCGCATCCAGAAGACAGAATATCGCCTGTGCAAGATGCTGTTTTTCGCGTTCAGGCCAGGATTGTCAAGGCTGTACCAGACAGCAAGGAGCAGAACTTGGTAGCTAGGCTTCTTGTTTCCTCCAATCAAATTGGCTGTCTTCTTGGGAAGGGTGGCTCCATCATAGCTGAAATGAGAAAGTCGACTGGTGCCTATATTCGTATTTTGGGAAAGGAGCAGATTCCAAAGTGTGCTGGGGAAGATGAAGAAGTGGTTCAGATAAATGGAGAGCCTGAAGCAGTTCAAGATGCTATGTTGCAGATTACTACTCGGCTGAGGCACCATTTTTTCCGTGATGCATTTCCATCAGTTAATAGTCATCCGAATCCTGCATTCATAGATCGACTTCCTTCATTTCCTTCATATTTTGGAAGGAGGGAATTATCGCCTCCAGGAATCTATTCAAATTTAGGCCCCTCGTTTCACAAGTTTGATGCTCTTAGTGGCATTCATTCACTTAGTGATTTGCGGGATGATCGACCTCCGTTTCTTCATAGGCCAGGCGCTTCACTGTTATCTGATAGAAAACCATGGAGCTCTCAGGGACTAGTTGAAGGTGGTGTTGGCTTGCCAGACTTTGCAGGAGTTCATCATAGAAGAATTGCTGGATTTGGAGGAGGAAATAATCCAGCCATTATTACGAGCACCACTGTTGAAGTAGTTGTTCCTCGAAACCTTGTCCCTGTAATTTGTGGAGAGAATGGTGAATGTTTGAAACAGATTCGTCAGATTTCTGATGCAAAAATTATGATTATTGAGCCAAAGCAAGGAGCAGTTGAAACTATGATTATCATTTCTGGAACGCCTGAGCAGACACATGCTGCCCAGAGTCTTATTCAAGCTTTTGTAATCAGCGAGACTGAGTCTAGTTGA 2058 43.44 MSAPLTPSKRSRDRNSVKPNGKGKWQKSSSSRSQNPPFKLSPGYAVFRILFPASRIDSLIGSGGDVLSQIREETGVEIRVEDTVSGSDERIVVIGGSNQETEVNPEQNNEEENKISEVEENNGDVAECRKEEDKDSPPLEDAKRKEVPHLQLRKALFLVSEKIFDEEQMDRTDVEGDKLSTFVLRLLVLSSQVGCILGKGGSVVKQMSSDSGAQIRILPRDKLPPCVTSSEELVQISGGIDVVKKALELVFQQLMENSPHDKDPVASSMTAQSLSRAHEYPVGSSSFNTHGGPYSGPRDVGNFHSSAPSIAPKQYETCISGRIKPSHEILSLRLLCPSERVGNVIGKGGAVVKILQQETGCDIKVVEGALDSEDRIILVAGPAHPEDRISPVQDAVFRVQARIVKAVPDSKEQNLVARLLVSSNQIGCLLGKGGSIIAEMRKSTGAYIRILGKEQIPKCAGEDEEVVQINGEPEAVQDAMLQITTRLRHHFFRDAFPSVNSHPNPAFIDRLPSFPSYFGRRELSPPGIYSNLGPSFHKFDALSGIHSLSDLRDDRPPFLHRPGASLLSDRKPWSSQGLVEGGVGLPDFAGVHHRRIAGFGGGNNPAIITSTTVEVVVPRNLVPVICGENGECLKQIRQISDAKIMIIEPKQGAVETMIIISGTPEQTHAAQSLIQAFVISETESS 685
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 86726327 86730501 - Hsped.01g22000.1 Hepe01g2200 561310

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Hepe01g2200 685 CDD KH-I_PEPPER_rpt1_like 332 397 - -
Hepe01g2200 685 ProSiteProfiles Type-1 KH domain profile. 44 115 - -
Hepe01g2200 685 ProSiteProfiles Type-1 KH domain profile. 610 674 - -
Hepe01g2200 685 MobiDBLite consensus disorder prediction 107 145 - -
Hepe01g2200 685 ProSiteProfiles Type-1 KH domain profile. 329 396 - -
Hepe01g2200 685 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 607 680 IPR036612 GO:0003723(InterPro)
Hepe01g2200 685 Gene3D K Homology domain, type 1 45 107 IPR036612 GO:0003723(InterPro)
Hepe01g2200 685 Gene3D K Homology domain, type 1 608 681 IPR036612 GO:0003723(InterPro)
Hepe01g2200 685 MobiDBLite consensus disorder prediction 1 39 - -
Hepe01g2200 685 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 331 405 IPR036612 GO:0003723(InterPro)
Hepe01g2200 685 ProSiteProfiles Type-1 KH domain profile. 414 483 - -
Hepe01g2200 685 Gene3D K Homology domain, type 1 411 491 IPR036612 GO:0003723(InterPro)
Hepe01g2200 685 Gene3D K Homology domain, type 1 179 258 IPR036612 GO:0003723(InterPro)
Hepe01g2200 685 ProSiteProfiles Type-1 KH domain profile. 181 250 - -
Hepe01g2200 685 MobiDBLite consensus disorder prediction 97 145 - -
Hepe01g2200 685 Gene3D K Homology domain, type 1 329 408 IPR036612 GO:0003723(InterPro)
Hepe01g2200 685 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 409 494 IPR036612 GO:0003723(InterPro)
Hepe01g2200 685 Pfam KH domain 417 483 IPR004088 GO:0003723(InterPro)
Hepe01g2200 685 Pfam KH domain 612 675 IPR004088 GO:0003723(InterPro)
Hepe01g2200 685 Pfam KH domain 184 250 IPR004088 GO:0003723(InterPro)
Hepe01g2200 685 Pfam KH domain 332 383 IPR004088 GO:0003723(InterPro)
Hepe01g2200 685 Pfam KH domain 47 100 IPR004088 GO:0003723(InterPro)
Hepe01g2200 685 CDD KH-I_PEPPER_rpt2_like 183 254 - -
Hepe01g2200 685 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 170 257 IPR036612 GO:0003723(InterPro)
Hepe01g2200 685 CDD KH-I_PEPPER_rpt2_like 416 488 - -
Hepe01g2200 685 PANTHER KH DOMAIN CONTAINING RNA BINDING PROTEIN 603 676 - GO:0003729(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0010468(PANTHER)
Hepe01g2200 685 SMART kh_6 609 679 IPR004087 GO:0003676(InterPro)
Hepe01g2200 685 SMART kh_6 180 255 IPR004087 GO:0003676(InterPro)
Hepe01g2200 685 SMART kh_6 413 488 IPR004087 GO:0003676(InterPro)
Hepe01g2200 685 SMART kh_6 43 120 IPR004087 GO:0003676(InterPro)
Hepe01g2200 685 SMART kh_6 328 408 IPR004087 GO:0003676(InterPro)
Hepe01g2200 685 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 38 99 IPR036612 GO:0003723(InterPro)
Hepe01g2200 685 MobiDBLite consensus disorder prediction 21 38 - -
Hepe01g2200 685 MobiDBLite consensus disorder prediction 280 307 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe01g2200 K21444 - - csv:101221201 1159.82
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe01g2200 Hepe-Chr1:86726327 Hepe02g0711 Hepe-Chr2:7795812 2.12e-93 dispersed
Hepe01g2200 Hepe-Chr1:86726327 Hepe08g2428 Hepe-Chr8:65079344 1.40e-30 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g580 Blo01g01784 . . . Bpe02g00157 . . Bma01g02568 . . . Cma09g00613 . . . Cpe06g00474 . . . . . . . . . . . . . . . Cone4ag1264 Cone7ag0879 . . Lsi04g02311 Csa03g04530 Chy04g00173 . . . Bda11g00816 . . . . . Sed05g1523 Cmo01g01505 Cmo09g00601 . . . Car09g00545 . Cpe02g00498 Bhi09g02548 Tan01g3895 Cmetu04g0312 . Hepe01g2200 . . Cla11g01461 Cam11g1513 Cec11g1551 Cco11g1546 . Cmu11g1494 Cre11g1915 . . . Cme04g00201
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007521 1 1 1 1 1 0 3 1 1 1 1 1 2 1 1 2 1 2 1 1 1 1 1 1 1 1 1 2 1 1 35