Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe01g2216 ATGATGGCTGTGACCTCCGGCTGCAAGGACTCTGCTAGCAAGATGAGCAGCTTGGATAATGGGAAGTATGTTAGGTACACACCTGAGCAAGTGGAAGCCCTTGAAAGGCTCTATTATGATTGCCCAAAACCCAGTTCTATCCGCCGCCAGCAGCTCATCAGGGAGTGCCCAATTCTCTCCAACATCGAACCCAAGCAGATCAAAGTTTGGTTCCAAAATCGGAGATGTAGAGAGAAGCAGAGGAAGGAGGCATCCCGTTTGCAGACTGTGAACAGGAAGCTGACGGCTATGAATAGACTCCTAATGGAGGAAAATGATAGGTTGCAGAAACAGGTGTCACACCTTGTGTACGAGAACAGTTATTTTCGTCAACAGACCCAGAATCAGAATGCGACCCTAGCCACCACTGACACAAGTTGCGAGTCAGTGGTGACAAGTGGTCAACAGAATTTGACTCCGCCGCATCCACCAAAGGATGCCAGCCCCGCAGGACTTTTGTCCATTGCGGAGGAGACTTTAGCAGAGTTTCTTTCAAAGGCTACCGGGACTGCTGTGGAGTGGGTCCAAATGCCTGGGATGAAGCCTGGTCCGGATTCCATTGGAATCGTTGCTATTTCTCATGGATGCACTGGAGTTGCAGCTCGTGCATGTGGACTTGTGGGTCTCGAACCTACAAGGGTGGCTGAAATTCTTAAAGATTGGCCTTCTTGGTATCGCGATTGCCGTGCCGTTGATGTTCTAAACGTCCTATCAACTGGAAATGGAGGAACCATTGAGCTTTTGTACATGCAGCTCTATGCACCTACTACTTTGGCACCTGCTCGTGATTTCTGGCTGCTGCGATACACATCTGTTTTGGAGGATGGTAGTCTTGTGGTATGTGAAAGATCTCTTAACAATACTCAGAATGGTCCAAGTATGCCTCCAGTACAAAACTTTGTAAGAGCAGAAATGCTACCAAGTGGTTATTTGATAAGACCTTGTGAAGGTGGTGGATCAATAATCCATATAGTTGATCACATGGACTTAGAACCTTGGAGCGTGCCTGAAGTGTTGCGGCCATTGTACAAGTCATCTACTCTTCTTGCTCAGAAGAACACAATGGCAGCATTACGCTTGTTGAGACAGATTTCACAAGAAGTTTCTCAACCAAATGTTACTGGTTGGGGAAGAAGACCTGCTGCTCTTCGTGCTCTTAGTCAGAGATTGAGCAGAGGTTTCAACGAAGCAGTTAATGGGCTTACAGACGAGGGATGGTCTTTGTTAGAAAATGATGGCATTGATGATGTTACTCTTCTTGTAAACATGTCTCATGGCAAGACAATGATGGGTGCAGATATTTCATATTCTAATGGCTTTCCATCTATGAGCAACGCAGTGCTTTGTGCCAAAGCATCGATGTTATTACAGAATGTCACTCCAGCAATGCTCATTAGGTTCTTGAGAGAACACCGGTCAGAATGGGCAGACAGCGGTATTGATGCGTACTCAGCTGCAGCAATTAAGACCGGTCAGTGTGGTTTACCAGGGTCTCATGCTGGAACTTTTGGGGGCCAGGTTATTCTTCCCTTGGCACAAACAGTTGAGCATGAAGAGTTTATGGAAGTTGTTAAATTTGAAAACGTGGGCCACTATAGGGATGATATGCTCATGCCTGGAGACATCTTCCTCCTCCAACTTTGCAATGGTGTGGATGAAAATACAGTTGGTACTTCTGCTGAACTCATCTTTGCTCCAATTGATGCCTCCTTTTCTGATGATGCACCTATTCTACCATCCGGCTTCCGAATCATTCCTCTCGATTCTGGGATGGATGCTTCAAGTCCAAACCGCACACTTGATCTTGCTTCAGCTCTTGACGTTGGACCTGCAGGGAATAAAGCTTCTGGTGATTGTGCTGGTCAATCAGGAAAATCAAAATCTGTGATGACAATTGCATTCCAATTTGTATTTGATGTTCACCTTCAAGATAATGTAGCAGCAATGGCACGGCAGTATGTCCGGAGCATTATAGCATCTGTTCAGAGGGTGGCACTGGCTCTTTCTCCTTCCAATTTTGGTCCTCATGCTAACCTTCAGACACCAGCTGGTGCTCCTGAAGCACAAACACTTGCTCGTTGGATCTCTCAAAGCTATAGGTGCTATATGGGCATGGAATTACTGAAAGATGAAGGAAGAGAATCCGTTCTCAAATCCCTTTGGCACCACTCAGATGCAATCATGTGCTGCTCTTTGAAGGCATTGCCAAATTTTACATTTGCAAATCAATCTGGACTTGACATGCTTGAGACAACCTTGGTGGCTCTCCAAGACATTACTCTGGAGAAGATTTTTGATGACAATGGAAAGAAAACTTTAGCCTCAGAGTTCCCGCGGATAATGCAGCAGGGCTTTCTTTGTCTTCAAGGGGGCGTCTGCTTATCAAGCATGGGAAGGGCAGTATCATATGAGAAAGCTGTGGCATGGAAGGTTTTGAATGAAGAAGAAAACGCTCACTGTATTTGCTTCATGTTTATGAACTGGTCTTTTGTTTGA 2535 45.72 MMAVTSGCKDSASKMSSLDNGKYVRYTPEQVEALERLYYDCPKPSSIRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRKEASRLQTVNRKLTAMNRLLMEENDRLQKQVSHLVYENSYFRQQTQNQNATLATTDTSCESVVTSGQQNLTPPHPPKDASPAGLLSIAEETLAEFLSKATGTAVEWVQMPGMKPGPDSIGIVAISHGCTGVAARACGLVGLEPTRVAEILKDWPSWYRDCRAVDVLNVLSTGNGGTIELLYMQLYAPTTLAPARDFWLLRYTSVLEDGSLVVCERSLNNTQNGPSMPPVQNFVRAEMLPSGYLIRPCEGGGSIIHIVDHMDLEPWSVPEVLRPLYKSSTLLAQKNTMAALRLLRQISQEVSQPNVTGWGRRPAALRALSQRLSRGFNEAVNGLTDEGWSLLENDGIDDVTLLVNMSHGKTMMGADISYSNGFPSMSNAVLCAKASMLLQNVTPAMLIRFLREHRSEWADSGIDAYSAAAIKTGQCGLPGSHAGTFGGQVILPLAQTVEHEEFMEVVKFENVGHYRDDMLMPGDIFLLQLCNGVDENTVGTSAELIFAPIDASFSDDAPILPSGFRIIPLDSGMDASSPNRTLDLASALDVGPAGNKASGDCAGQSGKSKSVMTIAFQFVFDVHLQDNVAAMARQYVRSIIASVQRVALALSPSNFGPHANLQTPAGAPEAQTLARWISQSYRCYMGMELLKDEGRESVLKSLWHHSDAIMCCSLKALPNFTFANQSGLDMLETTLVALQDITLEKIFDDNGKKTLASEFPRIMQQGFLCLQGGVCLSSMGRAVSYEKAVAWKVLNEEENAHCICFMFMNWSFV 844
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 86853700 86860638 - Hsped.01g22160.1 Hepe01g2216 561326
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe01g2216 844 Pfam START domain 168 376 IPR002913 GO:0008289(InterPro)
Hepe01g2216 844 ProSiteProfiles 'Homeobox' domain profile. 17 81 IPR001356 GO:0003677(InterPro)
Hepe01g2216 844 FunFam homeobox-leucine zipper protein ATHB-15 203 384 - -
Hepe01g2216 844 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-14 17 844 IPR044830 GO:0003700(InterPro)
Hepe01g2216 844 SUPERFAMILY Homeodomain-like 21 84 IPR009057 -
Hepe01g2216 844 Coils Coil 91 111 - -
Hepe01g2216 844 SUPERFAMILY Bet v1-like 167 377 - -
Hepe01g2216 844 Gene3D - 14 88 - -
Hepe01g2216 844 ProSiteProfiles START domain profile. 158 372 IPR002913 GO:0008289(InterPro)
Hepe01g2216 844 Gene3D - 202 378 IPR023393 -
Hepe01g2216 844 Pfam MEKHLA domain 703 843 IPR013978 -
Hepe01g2216 844 SMART START_1 167 377 IPR002913 GO:0008289(InterPro)
Hepe01g2216 844 SMART HOX_1 19 85 IPR001356 GO:0003677(InterPro)
Hepe01g2216 844 CDD START_ArGLABRA2_like 162 377 - -
Hepe01g2216 844 Pfam Homeodomain 22 80 IPR001356 GO:0003677(InterPro)
Hepe01g2216 844 CDD bZIP 74 113 - -
Hepe01g2216 844 CDD homeodomain 22 82 IPR001356 GO:0003677(InterPro)
Hepe01g2216 844 FunFam Homeobox-leucine zipper protein REVOLUTA 22 77 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe01g2216 Hepe-Chr1:86853700 Hepe03g1517 Hepe-Chr3:72054457 0.0 dispersed
Hepe01g2216 Hepe-Chr1:86853700 Hepe04g2047 Hepe-Chr4:75327603 0.0 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
54896 PF01852 START 2.30E-54 CL0209 Hepe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe01g2216 K09338 - csv:101218438 1655.96