Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Hepe01g2218 | ATGGAAGGACCCCAATATTTCCAGCCCGCCTTTTCCTCTCAATTCGCCACCACCGATAATAATAATAAACGTCACTACTCCTCCGATACCAATAAAGTACCCACCGCCGCCGCCACCTCCGCCGACCATTTCGTCGTTGAGGACCTCCTGGACTTCTCTAATGACGACGACGTTCTCTTCACTGACAACCAAACCCCCCCTACCTCCACCGATGATTCCTCCACTCTCACTTTACTCGATTCCTGCAATTCCTACCCCAATTTCCAACCCAACTTTAATTTCGCCGACGCTAATTTCTCCAGCGACCTCTGTGTACCGTATGACGACTTGGCCGAGCTGGAATGGCTTTCCAATTTCGTCGAAGACTCCTTCTCCACCGACGACTTGGAGAAGCTCAGTCTCATTTCCGGGGTGAATTCTCGAACCGACCAAGCTTTGAAAACCCGAGGAGAATTCCAGACCTCCGAGATAATGTCGGTACCGGCCAAAGCCGCTCGAAGCAAGCGTTCTCGGGCGCCGCCCTGCATATGGAACTCCCGATTATCCGTACTCTCCCCGACAAATTCGTCTTCCGAGACCGACGTTGTCGTCACGGCACATCCAACCACCGCCAAGAAAACAGCCAAGAAGAAAGAAACCCCGGACGACACCGGGAACAACGTGGAAGGGCGGAAGTGCCTCCATTGCGCCACCGACAAAACGCCGCAGTGGAGAACGGGCCCAATGGGCCCAAAGACGTTGTGTAACGCTTGTGGGGTCCGGTACAAGTCCGGGCGACTCGTACCGGAATACAGACCGGCGGCGAGCCCGACGTTCGTGCTGACGAAGCACTCGAATTCTCACCGGAAGGTAATGGAACTCCGGCGGCAGAAGGAGATGATGAGAGGACCGCAACAACAGCAACAATATGTTGTTCATCATGAGAGTATGGGGTTTGATCATGTATCCAACGACGACGATTATTTGATCCATCAACACATCGGGCCCGTCTTCGAATAG | 999 | 53.65 | MEGPQYFQPAFSSQFATTDNNNKRHYSSDTNKVPTAAATSADHFVVEDLLDFSNDDDVLFTDNQTPPTSTDDSSTLTLLDSCNSYPNFQPNFNFADANFSSDLCVPYDDLAELEWLSNFVEDSFSTDDLEKLSLISGVNSRTDQALKTRGEFQTSEIMSVPAKAARSKRSRAPPCIWNSRLSVLSPTNSSSETDVVVTAHPTTAKKTAKKKETPDDTGNNVEGRKCLHCATDKTPQWRTGPMGPKTLCNACGVRYKSGRLVPEYRPAASPTFVLTKHSNSHRKVMELRRQKEMMRGPQQQQQYVVHHESMGFDHVSNDDDYLIHQHIGPVFE | 332 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 86878927 | 86880283 | + | Hsped.01g22180.1 | Hepe01g2218 | 561328 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Hepe01g2218 | 332 | FunFam | GATA transcription factor | 216 | 303 | - | - | |
Hepe01g2218 | 332 | MobiDBLite | consensus disorder prediction | 1 | 33 | - | - | |
Hepe01g2218 | 332 | MobiDBLite | consensus disorder prediction | 7 | 33 | - | - | |
Hepe01g2218 | 332 | CDD | ZnF_GATA | 225 | 272 | IPR000679 | GO:0006355(InterPro)|GO:0043565(InterPro) | |
Hepe01g2218 | 332 | MobiDBLite | consensus disorder prediction | 192 | 220 | - | - | |
Hepe01g2218 | 332 | SUPERFAMILY | Glucocorticoid receptor-like (DNA-binding domain) | 223 | 284 | - | - | |
Hepe01g2218 | 332 | Pfam | GATA zinc finger | 226 | 260 | IPR000679 | GO:0006355(InterPro)|GO:0043565(InterPro) | |
Hepe01g2218 | 332 | ProSitePatterns | GATA-type zinc finger domain. | 226 | 251 | IPR000679 | GO:0006355(InterPro)|GO:0043565(InterPro) | |
Hepe01g2218 | 332 | PIRSF | Txn_fac_GATA_plant | 14 | 316 | IPR016679 | GO:0003677(InterPro)|GO:0005634(InterPro)|GO:0045893(InterPro) | |
Hepe01g2218 | 332 | Gene3D | - | 220 | 270 | IPR013088 | GO:0006355(InterPro)|GO:0008270(InterPro) | |
Hepe01g2218 | 332 | MobiDBLite | consensus disorder prediction | 205 | 220 | - | - | |
Hepe01g2218 | 332 | ProSiteProfiles | GATA-type zinc finger domain profile. | 220 | 256 | IPR000679 | GO:0006355(InterPro)|GO:0043565(InterPro) | |
Hepe01g2218 | 332 | PANTHER | GATA TRANSCRIPTION FACTOR | 43 | 292 | IPR051140 | GO:0005634(PANTHER)|GO:0030154(PANTHER) | |
Hepe01g2218 | 332 | SMART | GATA_3 | 220 | 270 | IPR000679 | GO:0006355(InterPro)|GO:0043565(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Hepe01g1028 | Hepe-Chr1:74982005 | Hepe01g2218 | Hepe-Chr1:86878927 | 2.92e-39 | dispersed | |
Hepe01g2218 | Hepe-Chr1:86878927 | Hepe02g1433 | Hepe-Chr2:18234531 | 7.40e-73 | dispersed | |
Hepe01g2218 | Hepe-Chr1:86878927 | Hepe10g0381 | Hepe-Chr10:4185213 | 3.81e-94 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
54897 | PF00320 | GATA | 3.00E-15 | CL0167 | Hepe | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Hepe01g2218 | - | - | - | 0.0 |