Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe01g2218 ATGGAAGGACCCCAATATTTCCAGCCCGCCTTTTCCTCTCAATTCGCCACCACCGATAATAATAATAAACGTCACTACTCCTCCGATACCAATAAAGTACCCACCGCCGCCGCCACCTCCGCCGACCATTTCGTCGTTGAGGACCTCCTGGACTTCTCTAATGACGACGACGTTCTCTTCACTGACAACCAAACCCCCCCTACCTCCACCGATGATTCCTCCACTCTCACTTTACTCGATTCCTGCAATTCCTACCCCAATTTCCAACCCAACTTTAATTTCGCCGACGCTAATTTCTCCAGCGACCTCTGTGTACCGTATGACGACTTGGCCGAGCTGGAATGGCTTTCCAATTTCGTCGAAGACTCCTTCTCCACCGACGACTTGGAGAAGCTCAGTCTCATTTCCGGGGTGAATTCTCGAACCGACCAAGCTTTGAAAACCCGAGGAGAATTCCAGACCTCCGAGATAATGTCGGTACCGGCCAAAGCCGCTCGAAGCAAGCGTTCTCGGGCGCCGCCCTGCATATGGAACTCCCGATTATCCGTACTCTCCCCGACAAATTCGTCTTCCGAGACCGACGTTGTCGTCACGGCACATCCAACCACCGCCAAGAAAACAGCCAAGAAGAAAGAAACCCCGGACGACACCGGGAACAACGTGGAAGGGCGGAAGTGCCTCCATTGCGCCACCGACAAAACGCCGCAGTGGAGAACGGGCCCAATGGGCCCAAAGACGTTGTGTAACGCTTGTGGGGTCCGGTACAAGTCCGGGCGACTCGTACCGGAATACAGACCGGCGGCGAGCCCGACGTTCGTGCTGACGAAGCACTCGAATTCTCACCGGAAGGTAATGGAACTCCGGCGGCAGAAGGAGATGATGAGAGGACCGCAACAACAGCAACAATATGTTGTTCATCATGAGAGTATGGGGTTTGATCATGTATCCAACGACGACGATTATTTGATCCATCAACACATCGGGCCCGTCTTCGAATAG 999 53.65 MEGPQYFQPAFSSQFATTDNNNKRHYSSDTNKVPTAAATSADHFVVEDLLDFSNDDDVLFTDNQTPPTSTDDSSTLTLLDSCNSYPNFQPNFNFADANFSSDLCVPYDDLAELEWLSNFVEDSFSTDDLEKLSLISGVNSRTDQALKTRGEFQTSEIMSVPAKAARSKRSRAPPCIWNSRLSVLSPTNSSSETDVVVTAHPTTAKKTAKKKETPDDTGNNVEGRKCLHCATDKTPQWRTGPMGPKTLCNACGVRYKSGRLVPEYRPAASPTFVLTKHSNSHRKVMELRRQKEMMRGPQQQQQYVVHHESMGFDHVSNDDDYLIHQHIGPVFE 332
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 86878927 86880283 + Hsped.01g22180.1 Hepe01g2218 561328
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe01g2218 332 FunFam GATA transcription factor 216 303 - -
Hepe01g2218 332 MobiDBLite consensus disorder prediction 1 33 - -
Hepe01g2218 332 MobiDBLite consensus disorder prediction 7 33 - -
Hepe01g2218 332 CDD ZnF_GATA 225 272 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Hepe01g2218 332 MobiDBLite consensus disorder prediction 192 220 - -
Hepe01g2218 332 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 223 284 - -
Hepe01g2218 332 Pfam GATA zinc finger 226 260 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Hepe01g2218 332 ProSitePatterns GATA-type zinc finger domain. 226 251 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Hepe01g2218 332 PIRSF Txn_fac_GATA_plant 14 316 IPR016679 GO:0003677(InterPro)|GO:0005634(InterPro)|GO:0045893(InterPro)
Hepe01g2218 332 Gene3D - 220 270 IPR013088 GO:0006355(InterPro)|GO:0008270(InterPro)
Hepe01g2218 332 MobiDBLite consensus disorder prediction 205 220 - -
Hepe01g2218 332 ProSiteProfiles GATA-type zinc finger domain profile. 220 256 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Hepe01g2218 332 PANTHER GATA TRANSCRIPTION FACTOR 43 292 IPR051140 GO:0005634(PANTHER)|GO:0030154(PANTHER)
Hepe01g2218 332 SMART GATA_3 220 270 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe01g1028 Hepe-Chr1:74982005 Hepe01g2218 Hepe-Chr1:86878927 2.92e-39 dispersed
Hepe01g2218 Hepe-Chr1:86878927 Hepe02g1433 Hepe-Chr2:18234531 7.40e-73 dispersed
Hepe01g2218 Hepe-Chr1:86878927 Hepe10g0381 Hepe-Chr10:4185213 3.81e-94 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
54897 PF00320 GATA 3.00E-15 CL0167 Hepe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe01g2218 - - - 0.0