Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe01g2218 ATGGAAGGACCCCAATATTTCCAGCCCGCCTTTTCCTCTCAATTCGCCACCACCGATAATAATAATAAACGTCACTACTCCTCCGATACCAATAAAGTACCCACCGCCGCCGCCACCTCCGCCGACCATTTCGTCGTTGAGGACCTCCTGGACTTCTCTAATGACGACGACGTTCTCTTCACTGACAACCAAACCCCCCCTACCTCCACCGATGATTCCTCCACTCTCACTTTACTCGATTCCTGCAATTCCTACCCCAATTTCCAACCCAACTTTAATTTCGCCGACGCTAATTTCTCCAGCGACCTCTGTGTACCGTATGACGACTTGGCCGAGCTGGAATGGCTTTCCAATTTCGTCGAAGACTCCTTCTCCACCGACGACTTGGAGAAGCTCAGTCTCATTTCCGGGGTGAATTCTCGAACCGACCAAGCTTTGAAAACCCGAGGAGAATTCCAGACCTCCGAGATAATGTCGGTACCGGCCAAAGCCGCTCGAAGCAAGCGTTCTCGGGCGCCGCCCTGCATATGGAACTCCCGATTATCCGTACTCTCCCCGACAAATTCGTCTTCCGAGACCGACGTTGTCGTCACGGCACATCCAACCACCGCCAAGAAAACAGCCAAGAAGAAAGAAACCCCGGACGACACCGGGAACAACGTGGAAGGGCGGAAGTGCCTCCATTGCGCCACCGACAAAACGCCGCAGTGGAGAACGGGCCCAATGGGCCCAAAGACGTTGTGTAACGCTTGTGGGGTCCGGTACAAGTCCGGGCGACTCGTACCGGAATACAGACCGGCGGCGAGCCCGACGTTCGTGCTGACGAAGCACTCGAATTCTCACCGGAAGGTAATGGAACTCCGGCGGCAGAAGGAGATGATGAGAGGACCGCAACAACAGCAACAATATGTTGTTCATCATGAGAGTATGGGGTTTGATCATGTATCCAACGACGACGATTATTTGATCCATCAACACATCGGGCCCGTCTTCGAATAG 999 53.65 MEGPQYFQPAFSSQFATTDNNNKRHYSSDTNKVPTAAATSADHFVVEDLLDFSNDDDVLFTDNQTPPTSTDDSSTLTLLDSCNSYPNFQPNFNFADANFSSDLCVPYDDLAELEWLSNFVEDSFSTDDLEKLSLISGVNSRTDQALKTRGEFQTSEIMSVPAKAARSKRSRAPPCIWNSRLSVLSPTNSSSETDVVVTAHPTTAKKTAKKKETPDDTGNNVEGRKCLHCATDKTPQWRTGPMGPKTLCNACGVRYKSGRLVPEYRPAASPTFVLTKHSNSHRKVMELRRQKEMMRGPQQQQQYVVHHESMGFDHVSNDDDYLIHQHIGPVFE 332
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 86878927 86880283 + Hsped.01g22180.1 Hepe01g2218 561328

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Hepe01g2218 332 FunFam GATA transcription factor 216 303 - -
Hepe01g2218 332 MobiDBLite consensus disorder prediction 1 33 - -
Hepe01g2218 332 MobiDBLite consensus disorder prediction 7 33 - -
Hepe01g2218 332 CDD ZnF_GATA 225 272 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Hepe01g2218 332 MobiDBLite consensus disorder prediction 192 220 - -
Hepe01g2218 332 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 223 284 - -
Hepe01g2218 332 Pfam GATA zinc finger 226 260 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Hepe01g2218 332 ProSitePatterns GATA-type zinc finger domain. 226 251 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Hepe01g2218 332 PIRSF Txn_fac_GATA_plant 14 316 IPR016679 GO:0003677(InterPro)|GO:0005634(InterPro)|GO:0045893(InterPro)
Hepe01g2218 332 Gene3D - 220 270 IPR013088 GO:0006355(InterPro)|GO:0008270(InterPro)
Hepe01g2218 332 MobiDBLite consensus disorder prediction 205 220 - -
Hepe01g2218 332 ProSiteProfiles GATA-type zinc finger domain profile. 220 256 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Hepe01g2218 332 PANTHER GATA TRANSCRIPTION FACTOR 43 292 IPR051140 GO:0005634(PANTHER)|GO:0030154(PANTHER)
Hepe01g2218 332 SMART GATA_3 220 270 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe01g2218 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe01g1028 Hepe-Chr1:74982005 Hepe01g2218 Hepe-Chr1:86878927 2.92e-39 dispersed
Hepe01g2218 Hepe-Chr1:86878927 Hepe02g1433 Hepe-Chr2:18234531 7.40e-73 dispersed
Hepe01g2218 Hepe-Chr1:86878927 Hepe10g0381 Hepe-Chr10:4185213 3.81e-94 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g279 Blo01g01777 . . Bda03g00433 . . Bma04g00410 . Cmo05g00609 Cmo12g00198 . . Car09g00560 Car12g00226 . Cpe07g00206 Cpe06g00489 . . . . . . . . . . . . . . . . . . Lsi04g02328 Csa03g04547 Chy04g00155 Cme03g01757 . . . . . . . . Sed02g0905 . Cmo09g00615 Cma09g00633 Cma12g00243 . . Cpe11g00511 . Bhi09g02574 Tan01g3930 Cmetu04g2325 . Hepe01g2218 Mch11g0766 . . . . . . . . Lsi08g01074 Csa02g02256 Chy03g01261 Cme04g00180
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Hepe10g0381 . 83 366 C2C2-Gata Transcription Factor Family AT5G25830 53.5 3.3e-68 255.8
Hepe01g2218 . 98 332 C2C2-Gata Transcription Factor Family AT5G25830 54.8 1.2e-62 237.3
Hepe01g2218 . 98 292 C2C2-Gata Transcription Factor Family AT3G60530 51.8 2.1e-43 172.9
Hepe07g0688 . 30 294 C2C2-Gata Transcription Factor Family AT3G51080 51.8 8.3e-53 204.5
Hepe04g1570 . 99 263 C2C2-Gata Transcription Factor Family AT4G36240 52.6 1.8e-39 159.8
Hepe06g1713 . 1 517 C2C2-Gata Transcription Factor Family AT4G17570 52.1 1.3e-135 480.3
Hepe06g1094 . 1 520 C2C2-Gata Transcription Factor Family AT4G17570 53.0 8.4e-135 477.6
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002406 3 2 1 1 0 1 2 2 2 2 2 2 3 2 2 3 2 2 3 2 2 2 2 2 2 2 2 4 2 1 60
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
54897 PF00320 GATA 3.00E-15 CL0167 Hepe TF