Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe01g2221 ATGTCAGCTGCTGCAACAGAACAACCTCAAAATTCAACTCCCAATACCCCCAACAAGCGCGTTCGAGATTCCAGCAAGCACCCTGTGTACCGCGGCGTTCGAATGCGCGCTTGGGGCAAATGGGTCTCCGAAATCCGACAGCCCCGCAAGAAATCCCGCATTTGGCTCGGAACATTCCCCAACCCAGAGATGGCCGCTCGAGCCCACGACGTCGCCGCCTTGTCCATCAAAGGTAACTCCGCCATTCTCAACTTCCCTGAGCTCGCTCATTCTCTTCCCCGCCCTGTCTCCTTCGCCCCTCGCGATGTCCAAGCCGCCGCCGCCAAGGCCGCCCACATGGACCCTTCTCCTAATTCCACCACCCCGCCCATGGACTCCGACGACCTCACCGAGATCGTCAAGCTGCCCAATCTCCCCACCAACAACTACTACGATCACACCGAGTTCGTGCTCATGGATTCCACCGACTCCGAGGGTTGGGTTTATCCGCCGCCCTGGTTACGAACCATGGAGGATTGCGCCTACAATAATAATAATAATACCAACGACTTCGGAATTGGGGCTCATACTAATTTCTTGTGGGATTATTAA 591 55.84 MSAAATEQPQNSTPNTPNKRVRDSSKHPVYRGVRMRAWGKWVSEIRQPRKKSRIWLGTFPNPEMAARAHDVAALSIKGNSAILNFPELAHSLPRPVSFAPRDVQAAAAKAAHMDPSPNSTTPPMDSDDLTEIVKLPNLPTNNYYDHTEFVLMDSTDSEGWVYPPPWLRTMEDCAYNNNNNTNDFGIGAHTNFLWDY 196
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 86907017 86907607 - Hsped.01g22210.1 Hepe01g2221 561331
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe01g2221 196 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 10 132 IPR051032 -
Hepe01g2221 196 PRINTS Ethylene responsive element binding protein signature 52 68 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Hepe01g2221 196 PRINTS Ethylene responsive element binding protein signature 30 41 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Hepe01g2221 196 ProSiteProfiles AP2/ERF domain profile. 29 86 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Hepe01g2221 196 Pfam AP2 domain 28 78 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Hepe01g2221 196 Gene3D AP2/ERF domain 29 87 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Hepe01g2221 196 MobiDBLite consensus disorder prediction 107 126 - -
Hepe01g2221 196 CDD AP2 30 88 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Hepe01g2221 196 SUPERFAMILY DNA-binding domain 29 87 IPR016177 GO:0003677(InterPro)
Hepe01g2221 196 FunFam Ethylene-responsive transcription factor 2 28 87 - -
Hepe01g2221 196 MobiDBLite consensus disorder prediction 1 28 - -
Hepe01g2221 196 SMART rav1_2 29 92 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Hepe01g2221 196 MobiDBLite consensus disorder prediction 1 19 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe01g2221 Hepe-Chr1:86907017 Hepe09g0797 Hepe-Chr9:7758930 6.09e-54 dispersed
Hepe03g0698 Hepe-Chr3:17209299 Hepe01g2221 Hepe-Chr1:86907017 2.11e-41 transposed
Hepe06g0226 Hepe-Chr6:8026740 Hepe01g2221 Hepe-Chr1:86907017 3.26e-28 transposed
Hepe01g2221 Hepe-Chr1:86907017 Hepe10g0364 Hepe-Chr10:3964166 1.59e-68 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
54898 PF00847 AP2 1.80E-13 CL0081 Hepe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe01g2221 K09286 - csv:101217333 256.144